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commons-research / microcosmics

A dump repo for the microcosmics project
MIT License
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Bibliographic study #3

Open oolonek opened 1 year ago

oolonek commented 1 year ago

List relevant bibliography (report DOI + relevant sections) in a new Dendron note (for example projects.commons-public.microcosmics.bibliography)

Soil metabolomics

Sample prepraration

Mass Spectrometry based metabolomics

Microcosms

Usecase of biolog Ecoplate

Quick and dirty microbials community chracterization

rima-bio commented 1 year ago
  1. Use of untargeted metabolomics for assessing soil quality and microbial function Soil sampling and description: [https://www.sciencedirect.com/science/article/pii/S0038071720300559].
rima-bio commented 1 year ago

to see (https://sci-hub.se/10.1007/978-1-4939-8757-3_4)

rima-bio commented 1 year ago

Isolation of Fungal Strains from Soil Samples: Solid potato dextrose agar (PDA) media were used for the isolation and identification of fungal strains. The inoculum prepared from soil samples was spread on PDA medium, and incubation was carried out at 28 ± 2°C for 5 to 7 days. After incubation, the morphology of the colonies was recorded to identify the specific fungus collected in each sample (ref) [https://www.mdpi.com/2304-8158/10/6/1280]. For bacteria: Starch casien agar(https://www.nature.com/articles/202928a0). We prepared a mineral solution composed of 2 g/L (NH4)2SO4, 4 g/L KH2PO4, 6 g/L Na2HPO4, 0.05 g/L CaCl.2H2O, 0.2 g/L MgSO4.7H2O, and 0.01 g/L FeSO4.7H2O (https://link.springer.com/article/10.1007/s11270-016-2789-z).