Closed zababurinsv closed 2 years ago
After 6 hours of installation, I got an error.
[Mon Sep 13 22:53:42 2021] Finished job 2. 463 of 472 steps (98%) done [Mon Sep 13 22:53:42 2021] rule shuffle_gin: input: data/psql/edges_gin.csv output: data/psql/edges_gin.shuf.csv jobid: 3 /usr/bin/bash: line 1: 72598 Killed cn5-vectors intersect data/vectors/crawl-300d-2M-retrofit.h5 data/vectors/w2v-google-news-retrofit.h5 data/vectors/glove12-840B-retrofit.h5 data/vectors/fasttext-opensubtitles-retrofit.h5 data/vectors/numberbatch-retrofitted.h5 data/vectors/intersection-projection.h5 [Mon Sep 13 22:54:18 2021] Error in rule merge_intersect: jobid: 177 output: data/vectors/numberbatch-retrofitted.h5, data/vectors/intersection-projection.h5 shell: cn5-vectors intersect data/vectors/crawl-300d-2M-retrofit.h5 data/vectors/w2v-google-news-retrofit.h5 data/vectors/glove12-840B-retrofit.h5 data/vectors/fasttext-opensubtitles-retrofit.h5 data/vectors/numberbatch-retrofitted.h5 data/vectors/intersection-projection.h5 (exited with non-zero exit code) Removing temporary output file data/psql/edges_gin.csv. [Mon Sep 13 22:56:03 2021] Finished job 3. 464 of 472 steps (98%) done Shutting down, this might take some time. Exiting because a job execution failed. Look above for error message Complete log: /home/zb/Desktop/conceptnet5/.snakemake/log/2021-09-13T175652.539242.snakemake.log (base) zb@ConceptNet:~/Desktop/conceptnet5$ pip install pytest PyLD Defaulting to user installation because normal site-packages is not writeable Requirement already satisfied: pytest in /home/zb/anaconda3/lib/python3.8/site-packages (6.2.3) Requirement already satisfied: PyLD in /home/zb/.local/lib/python3.8/site-packages (2.0.3) Requirement already satisfied: frozendict in /home/zb/.local/lib/python3.8/site-packages (from PyLD) (2.0.6) Requirement already satisfied: lxml in /home/zb/anaconda3/lib/python3.8/site-packages (from PyLD) (4.6.3) Requirement already satisfied: cachetools in /home/zb/.local/lib/python3.8/site-packages (from PyLD) (4.2.2) Requirement already satisfied: attrs>=19.2.0 in /home/zb/anaconda3/lib/python3.8/site-packages (from pytest) (20.3.0) Requirement already satisfied: iniconfig in /home/zb/anaconda3/lib/python3.8/site-packages (from pytest) (1.1.1) Requirement already satisfied: packaging in /home/zb/anaconda3/lib/python3.8/site-packages (from pytest) (20.9) Requirement already satisfied: pluggy<1.0.0a1,>=0.12 in /home/zb/anaconda3/lib/python3.8/site-packages (from pytest) (0.13.1) Requirement already satisfied: py>=1.8.2 in /home/zb/anaconda3/lib/python3.8/site-packages (from pytest) (1.10.0) Requirement already satisfied: toml in /home/zb/anaconda3/lib/python3.8/site-packages (from pytest) (0.10.2) Requirement already satisfied: pyparsing>=2.0.2 in /home/zb/anaconda3/lib/python3.8/site-packages (from packaging->pytest) (2.4.7) (base) zb@ConceptNet:~/Desktop/conceptnet5$ pytest ============================= test session starts ============================== platform linux -- Python 3.8.8, pytest-6.2.3, py-1.10.0, pluggy-0.13.1 rootdir: /home/zb/Desktop/conceptnet5, configfile: setup.cfg plugins: anyio-2.2.0 collected 104 items conceptnet5/edges.py . [ 0%] conceptnet5/nodes.py .... [ 4%] conceptnet5/uri.py ................ [ 20%] conceptnet5/builders/combine_assertions.py . [ 21%] conceptnet5/formats/semantic_web.py .... [ 25%] conceptnet5/language/token_utils.py . [ 25%] conceptnet5/readers/dbpedia.py . [ 26%] conceptnet5/tests/test_convert.py .. [ 28%] conceptnet5/tests/test_languages.py F [ 29%] conceptnet5/tests/test_propagate.py .... [ 33%] conceptnet5/tests/test_sounds_like.py . [ 34%] conceptnet5/tests/test_vectors.py ................ [ 50%] conceptnet5/tests/full_build/test_all_relations_recorded.py s [ 50%] conceptnet5/tests/full_build/test_enough_data_exists.py ssssssssssssss [ 64%] conceptnet5/tests/small_build/test_api.py EE [ 66%] conceptnet5/tests/small_build/test_built.py FFFFFFE [ 73%] conceptnet5/tests/small_build/test_json_ld.py EEF [ 75%] conceptnet5/tests/small_build/test_lemmatizer.py EEEEE [ 80%] conceptnet5/tests/small_build/test_queries.py EEEEEEEEEE [ 90%] conceptnet5/util/sounds_like.py .......... [100%] ==================================== ERRORS ==================================== _____________________ ERROR at setup of test_related_query _____________________
Please tell me if it is possible to continue the installation after a failure?
After 6 hours of installation, I got an error.
Please tell me if it is possible to continue the installation after a failure?