gwas.py is not working with Saige

comorment / containers

CoMorMent-Containers

https://www.comorment.uio.no

GNU General Public License v3.0

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Closed ttfiliz closed 6 months ago

ttfiliz commented 7 months ago

Describe the bug The script, step2_SPAtests.R in the Saige container doesn't have the option numLinesOutput which is required by gwas.py.

To Reproduce Try to run GWAS demo run3