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compSPI / simSPI

Generative Models
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TEMsimulator output format compatibility #90

Open fredericpoitevin opened 2 years ago

fredericpoitevin commented 2 years ago

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fredericpoitevin commented on 2022-03-18T15:08:28Z ----------------------------------------------------------------

I'll create an issue about output formatting. Would be nice to have the options to write .mrcs instead of .h5 and a .star readily readable by Relion.


Originally posted by @review-notebook-app[bot] in https://github.com/compSPI/simSPI/issues/86#issuecomment-1072502121

geoffwoollard commented 2 years ago

I think EMAN switched to .h5. Steve Ludtke speaks to it in this presentation about data compression of cryoEM images: https://www.youtube.com/watch?v=XEDAme0-fQ4&t=241s

But by far .mrc is more common.

Could also do .npy/.npz for numpy array. https://numpy.org/doc/stable/reference/generated/numpy.savez.html

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