compbio-UofT / medsavant

MedSavant is a search engine for genetic variants
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Nullpointer exception in variant navigator on windows #311

Closed jvlasblom closed 10 years ago

jvlasblom commented 10 years ago

ERROR org.ut.biolab.medsavant.client.query.QueryViewController - java.lang.NullPointerException java.lang.NullPointerException at org.ut.biolab.medsavant.client.query.value.encode.NumericConditionEncoder.unencodeConditions(NumericConditionEncoder.java:52) at org.ut.biolab.medsavant.client.query.medsavant.complex.VariantConditionGenerator.generateNumericConditionForVariantDatabaseField(VariantConditionGenerator.java:255) at org.ut.biolab.medsavant.client.query.medsavant.complex.VariantConditionGenerator.getConditionsFromEncoding(VariantConditionGenerator.java:114) at org.ut.biolab.medsavant.client.query.medsavant.MedSavantConditionViewGenerator.generateConditionForItem(MedSavantConditionViewGenerator.java:197) at org.ut.biolab.medsavant.client.query.QueryViewController.getSQLConditionsFrom(QueryViewController.java:723) at org.ut.biolab.medsavant.client.query.QueryViewController.getSQLConditionsFrom(QueryViewController.java:711) at org.ut.biolab.medsavant.client.query.QueryViewController.restrictToRegion(QueryViewController.java:151) at org.ut.biolab.medsavant.client.query.QueryViewController.restrictToRegion(QueryViewController.java:186) at org.ut.biolab.medsavant.client.view.genetics.variantinfo.OtherIndividualsVariantSubInspector.getQueryResults(OtherIndividualsVariantSubInspector.java:116) at org.ut.biolab.medsavant.client.view.genetics.variantinfo.OtherIndividualsSubInspector$5.doInBackground(OtherIndividualsSubInspector.java:322) at org.ut.biolab.medsavant.client.view.genetics.variantinfo.OtherIndividualsSubInspector$5.doInBackground(OtherIndividualsSubInspector.java:300) at org.ut.biolab.medsavant.client.util.MedSavantWorker$1.doInBackground(MedSavantWorker.java:67) at javax.swing.SwingWorker$1.call(SwingWorker.java:296) at java.util.concurrent.FutureTask.run(FutureTask.java:262) at javax.swing.SwingWorker.run(SwingWorker.java:335) at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:471) at java.util.concurrent.FutureTask.run(FutureTask.java:262) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615) at java.lang.Thread.run(Thread.java:744) 2014-03-18 17:12:15,479 59965 [AWT-EventQueue-0] ERROR org.ut.biolab.medsavant.client.util.ClientMiscUtils - Exception thrown by background task: Null pointer exception java.lang.NullPointerException at org.ut.biolab.medsavant.client.view.genetics.variantinfo.OtherIndividualsSubInspector.buildDnaIDVariantMap(OtherIndividualsSubInspector.java:231) at org.ut.biolab.medsavant.client.view.genetics.variantinfo.OtherIndividualsSubInspector.access$700(OtherIndividualsSubInspector.java:81) at org.ut.biolab.medsavant.client.view.genetics.variantinfo.OtherIndividualsSubInspector$5.doInBackground(OtherIndividualsSubInspector.java:322) at org.ut.biolab.medsavant.client.view.genetics.variantinfo.OtherIndividualsSubInspector$5.doInBackground(OtherIndividualsSubInspector.java:300) at org.ut.biolab.medsavant.client.util.MedSavantWorker$1.doInBackground(MedSavantWorker.java:67) at javax.swing.SwingWorker$1.call(SwingWorker.java:296) at java.util.concurrent.FutureTask.run(FutureTask.java:262) at javax.swing.SwingWorker.run(SwingWorker.java:335) at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:471) at java.util.concurrent.FutureTask.run(FutureTask.java:262) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615) at java.lang.Thread.run(Thread.java:744)

jvlasblom commented 10 years ago

Can't reproduce with the latest builds. Marking closed.