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compbioNJU / scPlant

A versatile framework for single-cell transcriptomic data analysis in plants.
https://compbioNJU.github.io/scPlant
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Error in pdf(x, ...) : cannot open file './output/RunMonocle3/deg_clusters_module.pdf' #6

Open Richie-rider opened 4 months ago

Richie-rider commented 4 months ago

RunMonocle3(Sweetpotato_harmony) No preprocess_method specified, using preprocess_method = 'PCA' Found more than one class "dist" in cache; using the first, from namespace 'spam' Also defined by ‘BiocGenerics’ Found more than one class "dist" in cache; using the first, from namespace 'spam' Also defined by ‘BiocGenerics’ |=================================================================================| 100% |=================================================================================| 100% Registered S3 method overwritten by 'spdep': method from plot.mst ape |==================================================================| 100%, Elapsed 30:03 Found more than one class "dist" in cache; using the first, from namespace 'spam' Also defined by ‘BiocGenerics’ Found more than one class "dist" in cache; using the first, from namespace 'spam' Also defined by ‘BiocGenerics’ Error in pdf(x, ...) : cannot open file './output/RunMonocle3/deg_clusters_module.pdf'