Html visualization not working!

compbiocore / VariantVisualization.jl

Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:

https://compbiocore.github.io/VariantVisualization.jl/stable/

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Html visualization not working! #119

Open aa-samad opened 4 months ago

aa-samad commented 4 months ago

VCF input: 1000 variant from the HG00096 sample in the GRCh38 dataset in a vcf file (here renamed to .txt for upload allowance from GitHub) sample.txt

The Julia version: 1.6 LTS system: Ubuntu 20.04 LTS (kernel: 5.15)

I'm trying:

viva -f sample.vcf -m genotype -s html -o ~/Desktop/

and the HTML does not work! white screen!

The interactive visualization window in Julia closes immediately! The png and pdf work fine!

aa-samad commented 4 months ago

Oh! now I have realized the png/pdf output is also not correct? Do we have some sort of cutoff for the variants to show? Genotype_a vcf