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compbiocore / VariantVisualization.jl

Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:
https://compbiocore.github.io/VariantVisualization.jl/stable/
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X not included in vcf record pos = "X" post filtering #20

Closed gtollefson closed 5 years ago

gtollefson commented 5 years ago

When use siglist filter for vcf file with pos in format "X", doesn't incude "X" in the chosen records. Alper says it does include when vcf file has pos "chrX".

Can be traced to returnXY!() in load_siglist() in path for filtering vcf record with pos in format "chr1"