Add reference genome to alignment metrics

compbiocore / qcdb

QC Database

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Add reference genome to alignment metrics #16

Open JRWallace opened 5 years ago

JRWallace commented 5 years ago

Only relevant for the Picard tools metrics, add the reference genome as an additional field in the .json file.

JRWallace commented 4 years ago

Might want to parse this from the Picard tools file itself -- if we use the refchef references we can use the 'key' as the reference ID, it will always be the 3rd to last entry in the path (so like, key/primary/reference.fasta).