For any particular tool, if one file has a parsing error then none of the other files for that tool will be parsed, even if they contain a different sample_id. For example, if the tool is qckitfastq, and there are 2 samples in the directory srx1_srs1, srx1_srs2, if srx1_srs1 throws a parsing error, then srx1_srs2 won't get parsed either. The behavior we want instead is for srx1_srs2 to get parsed even if srx1_srs1 throws an error while parsing.
For any particular tool, if one file has a parsing error then none of the other files for that tool will be parsed, even if they contain a different
sample_id. For example, if the tool isqckitfastq, and there are 2 samples in the directorysrx1_srs1,srx1_srs2, ifsrx1_srs1throws a parsing error, thensrx1_srs2won't get parsed either. The behavior we want instead is forsrx1_srs2to get parsed even ifsrx1_srs1throws an error while parsing.