search

compbiocore / qcdb

QC Database
0 stars 1 forks source link

some fastqc files don't have tile quality #28

Closed aguang closed 4 years ago

aguang commented 4 years ago

Some fastqc_data.txt files don't have tile quality as a module. This results in a parsing bug where each module has the wrong data, and where kmer_content gets excluded entirely. To fix this, the fastqc parser needs to be rewritten to also check for the module names (i.e. the >> headers) instead of assuming they will correspond perfectly.

aguang commented 4 years ago

additionally, if there are no overrepresented sequences then the start index of each module will be off