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compbiocore / qcdb

QC Database
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Issue 10 #31

Closed aguang closed 4 years ago

aguang commented 4 years ago

Close #10. Added a column for read_type in db_create, then updated parsers for qckitfastq and fastqc. picardTools parser adds NULL as expected

codecov[bot] commented 4 years ago

Codecov Report

Merging #31 into devel will increase coverage by 19.73%. The diff coverage is 94.72%.

Impacted file tree graph

@@             Coverage Diff             @@
##            devel      #31       +/-   ##
===========================================
+ Coverage   70.34%   90.07%   +19.73%     
===========================================
  Files          10       13        +3     
  Lines         499      655      +156     
===========================================
+ Hits          351      590      +239     
+ Misses        148       65       -83
Impacted Files Coverage Δ
qcdb/parsers/picardtools_parse.py 90% <100%> (+4.28%) :arrow_up:
tests/test_sra.py 100% <100%> (ø)
tests/test_parse.py 100% <100%> (ø)
tests/conftest.py 100% <100%> (ø)
qcdb/parsers/qckitfastq_parse.py 89.47% <100%> (+1.97%) :arrow_up:
qcdb/sra_metadata.py 100% <100%> (ø)
qcdb/parsers/parse.py 96.2% <100%> (+13.67%) :arrow_up:
qcdb/db_create.py 65.21% <60.86%> (+65.21%) :arrow_up:
qcdb/db_load.py 70.73% <81.25%> (+40.49%) :arrow_up:
qcdb/parsers/fastqc_parse.py 91.46% <88.63%> (-4.1%) :arrow_down:
... and 9 more

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