compbiocore / qcdb

QC Database
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feat: db_load to run all tool parsers #52

Open aguang opened 2 years ago

aguang commented 2 years ago

Ultimately we want to change db_load.py so that we aren't redundantly creating a bunch of YAMLs that need to be parsed and can streamline arguments to pass in for a later crawl script

Shell script, pass directory, in shell script find metadata.yaml based on parent directory, pass that onto qcdb & pass directory for qcdb to search through

params.yaml - change from data directory to just tools

db_load.py - change to run tool parsers based on params.yaml, run on data directory based on passed in argument, run on metadata directory based on passed in argument

aguang commented 2 years ago

Branch off of #41