compbiol / CAMSA

CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies
MIT License
24 stars 4 forks source link

CAMSA input file cleaner #5

Closed aganezov closed 7 years ago

aganezov commented 8 years ago

A util tool that intakes a CAMSA formatted file(s) with assembly points and performs several checks on it, as well as changes some information with respect to possible unsupported by CAMSA situations.

Proposed stats:

Proposed signature:

camsaPrepareInput.py POINTS [POINTS ...] 
                     [--error-remove]
                     [--duplicates-{remove,compress}]
                     [--self-adjacent-remove]

where flags mean the following: