compbiomed celda issues

compbiomed / celda

Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data

MIT License

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issues

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Gene set enrichment function

#396 AhmedYoussef95 closed 5 months ago
1
Devel

#395 Irisapo closed 5 months ago
0
Add functionality

#394 ykoga07 closed 5 years ago
1
Merging devel into master before S3/S4 Transition

#393 definitelysean closed 5 years ago
1
DeconX

#392 Irisapo closed 5 years ago
1
Output violin plots

#391 ykoga07 closed 5 years ago
1
Outputting of tab-delimited files containing all genes in module

#390 ykoga07 closed 5 years ago
1
deconX

#389 Irisapo closed 5 years ago
2
added datatype checking and unit test

#388 Irisapo closed 5 years ago
0
deconx

#387 Irisapo closed 5 years ago
2
Handle edge cases in plotDimReduceFeature

#386 definitelysean closed 5 years ago
0
Refactor of S3 Code to S4

#385 definitelysean closed 5 years ago
0
Way to merge celda list

#384 chlee-tabin opened 5 years ago
4
plotDimReduceFeature order

#383 joshua-d-campbell closed 5 years ago
1
Refactor moduleHeatmap

#382 ykoga07 closed 5 years ago
1
Rebased #380

#381 definitelysean closed 5 years ago
1
Updated documentation

#380 joshua-d-campbell closed 5 years ago
0
Explicit method references to reduce NAMESPACE imports

#379 definitelysean closed 5 years ago
1
Updated documentation for celda_C/G/CG

#378 joshua-d-campbell closed 5 years ago
1
Bug Fixes & Josh's Docs

#377 definitelysean closed 5 years ago
0
Documentation update

#376 joshua-d-campbell closed 5 years ago
1
Speeding up Examples and Tests

#375 definitelysean closed 5 years ago
0
Vignette edits

#374 ykoga07 closed 5 years ago
0
DifferentialExpression

#373 joshua-d-campbell closed 5 years ago
1
Fixing final lines and use of T/F in tests Use is() instead of class()==

#372 zhewa closed 5 years ago
0
seperate fastnorm function tests to identify which fails

#371 zhewa closed 5 years ago
1
Removed old docs, updated Travis params

#370 definitelysean closed 5 years ago
1
Remove old data & update documentation

#369 definitelysean closed 5 years ago
0
Convert all png to jpg

#368 ykoga07 closed 5 years ago
1
Bump version for Bioconductor build

#367 definitelysean closed 5 years ago
0
Compbiomed devel

#366 ykoga07 closed 5 years ago
1
Merging from devel for Bioconductor Submission

#365 definitelysean closed 5 years ago
0
Merging devel into master for Bioconductor Submission

#364 definitelysean closed 5 years ago
0
Add vignette html

#363 ykoga07 closed 5 years ago
1
Conforming to Bioconductor Package Requirements

#362 definitelysean closed 5 years ago
1
Added examples to simulateCells, finalLogLik, featureModuleLookup

#361 ykoga07 closed 5 years ago
1
Namespace and documentation changes for BiocCheck

#360 definitelysean closed 5 years ago
1
Bugfix in plotDimReduceModule

#359 definitelysean closed 5 years ago
0
Renamed moduleHeatmap()

#358 definitelysean closed 5 years ago
0
Y-Axis Limits in plotGridSearchPerplexity()

#357 definitelysean opened 5 years ago
0
Compbiomed devel

#356 ykoga07 closed 5 years ago
1
Compbiomed devel

#355 ykoga07 closed 5 years ago
0
Dimensionality Reduction Plot Function Renaming & Bugfixes

#354 ykoga07 closed 6 years ago
1
Validate counts before modeling.

#353 definitelysean closed 6 years ago
1
Perplexity model checks

#352 definitelysean closed 6 years ago
1
Ensure z's < K, y's < L in logLikelihood

#351 definitelysean closed 6 years ago
1
Add test units

#350 ykoga07 closed 6 years ago
1
perplexity model checks

#349 joshua-d-campbell closed 6 years ago
1
logLikelihood error checking

#348 joshua-d-campbell closed 6 years ago
1
Count matrix checking/processing

#347 joshua-d-campbell closed 6 years ago
1