Scanpy and additional fixes

[codecov[bot]]

Codecov Report

Base: 57.49% // Head: 55.12% // Decreases project coverage by -2.37% :warning:

Coverage data is based on head (55a4ba4) compared to base (dbbab1b). Patch coverage: 2.88% of modified lines in pull request are covered.

Additional details and impacted files

```diff @@ Coverage Diff @@ ## devel #680 +/- ## ========================================== - Coverage 57.49% 55.12% -2.38% ========================================== Files 75 76 +1 Lines 11421 11937 +516 ========================================== + Hits 6567 6580 +13 - Misses 4854 5357 +503 ``` | [Impacted Files](https://codecov.io/gh/compbiomed/singleCellTK/pull/680?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=compbiomed) | Coverage Δ | | |---|---|---| | [R/scanpyFunctions.R](https://codecov.io/gh/compbiomed/singleCellTK/pull/680?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=compbiomed#diff-Ui9zY2FucHlGdW5jdGlvbnMuUg==) | `0.00% <0.00%> (ø)` | | | [R/runNormalization.R](https://codecov.io/gh/compbiomed/singleCellTK/pull/680?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=compbiomed#diff-Ui9ydW5Ob3JtYWxpemF0aW9uLlI=) | `35.71% <10.00%> (-3.48%)` | :arrow_down: | | [R/getTopHVG.R](https://codecov.io/gh/compbiomed/singleCellTK/pull/680?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=compbiomed#diff-Ui9nZXRUb3BIVkcuUg==) | `59.88% <15.15%> (-10.84%)` | :arrow_down: | | [R/runDimReduce.R](https://codecov.io/gh/compbiomed/singleCellTK/pull/680?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=compbiomed#diff-Ui9ydW5EaW1SZWR1Y2UuUg==) | `18.18% <23.07%> (+0.65%)` | :arrow_up: | | [R/runFeatureSelection.R](https://codecov.io/gh/compbiomed/singleCellTK/pull/680?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=compbiomed#diff-Ui9ydW5GZWF0dXJlU2VsZWN0aW9uLlI=) | `81.25% <25.00%> (-18.75%)` | :arrow_down: | | [R/seuratFunctions.R](https://codecov.io/gh/compbiomed/singleCellTK/pull/680?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=compbiomed#diff-Ui9zZXVyYXRGdW5jdGlvbnMuUg==) | `73.21% <71.42%> (+0.13%)` | :arrow_up: | Help us with your feedback. Take ten seconds to tell us [how you rate us](https://about.codecov.io/nps?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=compbiomed). Have a feature suggestion? [Share it here.](https://app.codecov.io/gh/feedback/?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=compbiomed)

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