There are still some bugs that I am trying to track down (edge cases). Please do not push this code to prod yet.
Changes:
-Added AnnData (h5ad) import and export capability
-Added Seurat (rds) import capability
-Fixed a number of deprecated function calls
-Preliminary batch input support by mass conversion to SCE
Todo:
-Squash a bug caused by a a dataset leading to strange function calls in converting from SCE to AnnData (edge case)
-Rework deprecated function call in creation of sparse matrix
-Fully test batch input support
-Figure out why AnnData support sometimes but not always fails (may be a local issue)
Tested on PBMC1k, 3k, 4k datasets, and randomly selected datasets from CZI.
There are still some bugs that I am trying to track down (edge cases). Please do not push this code to prod yet.
Changes: -Added AnnData (h5ad) import and export capability -Added Seurat (rds) import capability -Fixed a number of deprecated function calls -Preliminary batch input support by mass conversion to SCE
Todo: -Squash a bug caused by a a dataset leading to strange function calls in converting from SCE to AnnData (edge case) -Rework deprecated function call in creation of sparse matrix -Fully test batch input support -Figure out why AnnData support sometimes but not always fails (may be a local issue)
Tested on PBMC1k, 3k, 4k datasets, and randomly selected datasets from CZI.