compbiomed / singleCellTK

Interactively analyze single cell genomic data
https://camplab.net/sctk/
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Fixed STARSolo import bug #716

Closed mingl1997 closed 9 months ago

mingl1997 commented 9 months ago

Main: -Fixed the STARSolo import bug due to a passed parameter not successfully being sent to an internal function -Fixed a STARSolo import bug causing files to fail to be imported due to conflicting expected parameters Other: -n/a Future: -May wrap SoupX function call in a try/catch block due to SoupX failing to identify marker genes for certain datasets, resulting in premature end of runtime due to an unhandled error Notes: -Last Ubuntu automatic check is failing due to a codecov SHASUM error, and not the actual unit tests

codecov[bot] commented 9 months ago

Codecov Report

Patch coverage: 42.85% and project coverage change: -0.02% :warning:

Comparison is base (c250855) 52.77% compared to head (5e9e1a6) 52.76%.

:exclamation: Current head 5e9e1a6 differs from pull request most recent head 7b30720. Consider uploading reports for the commit 7b30720 to get more accurate results

Additional details and impacted files ```diff @@ Coverage Diff @@ ## devel #716 +/- ## ========================================== - Coverage 52.77% 52.76% -0.02% ========================================== Files 79 79 Lines 12685 12695 +10 ========================================== + Hits 6695 6699 +4 - Misses 5990 5996 +6 ``` | [Files Changed](https://app.codecov.io/gh/compbiomed/singleCellTK/pull/716?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=compbiomed) | Coverage Δ | | |---|---|---| | [R/sctkQCUtils.R](https://app.codecov.io/gh/compbiomed/singleCellTK/pull/716?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=compbiomed#diff-Ui9zY3RrUUNVdGlscy5S) | `0.00% <0.00%> (ø)` | | | [R/importSTARSolo.R](https://app.codecov.io/gh/compbiomed/singleCellTK/pull/716?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=compbiomed#diff-Ui9pbXBvcnRTVEFSU29sby5S) | `89.88% <75.00%> (-1.68%)` | :arrow_down: |

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