compbiomed / singleCellTK

Interactively analyze single cell genomic data
https://camplab.net/sctk/
Other
170 stars 74 forks source link

Try/catch wrappers for SoupX and Scrublet #719

Closed mingl1997 closed 9 months ago

mingl1997 commented 9 months ago

Fixes: -Try/catch wrapper for SoupX in the event that no marker genes are found -Try/catch wrapper for Scrublet in the event of an unexpected crash To do: -Isolate combineSCE bug (inner join?) and fix

codecov[bot] commented 9 months ago

Codecov Report

Attention: 111 lines in your changes are missing coverage. Please review.

Comparison is base (8f3e43f) 52.77% compared to head (8555c7a) 52.75%.

:exclamation: Current head 8555c7a differs from pull request most recent head 4b867a3. Consider uploading reports for the commit 4b867a3 to get more accurate results

Additional details and impacted files ```diff @@ Coverage Diff @@ ## devel #719 +/- ## ========================================== - Coverage 52.77% 52.75% -0.02% ========================================== Files 79 79 Lines 12696 12700 +4 ========================================== Hits 6700 6700 - Misses 5996 6000 +4 ``` | [Files](https://app.codecov.io/gh/compbiomed/singleCellTK/pull/719?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=compbiomed) | Coverage Δ | | |---|---|---| | [R/runSoupX.R](https://app.codecov.io/gh/compbiomed/singleCellTK/pull/719?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=compbiomed#diff-Ui9ydW5Tb3VwWC5S) | `0.00% <0.00%> (ø)` | |

:umbrella: View full report in Codecov by Sentry.
:loudspeaker: Have feedback on the report? Share it here.