compbiomed / singleCellTK

Interactively analyze single cell genomic data
https://camplab.net/sctk/
Other
170 stars 74 forks source link

Solved warnings and notes from BiocCheck #726

Closed npervaiz closed 8 months ago

codecov[bot] commented 8 months ago

Codecov Report

Attention: 113 lines in your changes are missing coverage. Please review.

Comparison is base (dabf926) 52.72% compared to head (8ea8cbf) 52.54%.

:exclamation: Current head 8ea8cbf differs from pull request most recent head 9a86318. Consider uploading reports for the commit 9a86318 to get more accurate results

Additional details and impacted files ```diff @@ Coverage Diff @@ ## devel #726 +/- ## ========================================== - Coverage 52.72% 52.54% -0.18% ========================================== Files 79 79 Lines 12703 12767 +64 ========================================== + Hits 6698 6709 +11 - Misses 6005 6058 +53 ``` | [Files](https://app.codecov.io/gh/compbiomed/singleCellTK/pull/726?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=compbiomed) | Coverage Δ | | |---|---|---| | [R/celda\_decontX.R](https://app.codecov.io/gh/compbiomed/singleCellTK/pull/726?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=compbiomed#diff-Ui9jZWxkYV9kZWNvbnRYLlI=) | `61.24% <100.00%> (+0.30%)` | :arrow_up: | | [R/dropletUtils\_barcodeRank.R](https://app.codecov.io/gh/compbiomed/singleCellTK/pull/726?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=compbiomed#diff-Ui9kcm9wbGV0VXRpbHNfYmFyY29kZVJhbmsuUg==) | `97.22% <100.00%> (+0.03%)` | :arrow_up: | | [R/getTopHVG.R](https://app.codecov.io/gh/compbiomed/singleCellTK/pull/726?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=compbiomed#diff-Ui9nZXRUb3BIVkcuUg==) | `60.11% <100.00%> (+0.23%)` | :arrow_up: | | [R/runTSNE.R](https://app.codecov.io/gh/compbiomed/singleCellTK/pull/726?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=compbiomed#diff-Ui9ydW5UU05FLlI=) | `78.57% <100.00%> (+0.31%)` | :arrow_up: | | [R/runUMAP.R](https://app.codecov.io/gh/compbiomed/singleCellTK/pull/726?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=compbiomed#diff-Ui9ydW5VTUFQLlI=) | `81.81% <100.00%> (+0.27%)` | :arrow_up: | | [R/scater\_PCA.R](https://app.codecov.io/gh/compbiomed/singleCellTK/pull/726?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=compbiomed#diff-Ui9zY2F0ZXJfUENBLlI=) | `100.00% <100.00%> (ø)` | | | [R/scDblFinder\_doubletDetection.R](https://app.codecov.io/gh/compbiomed/singleCellTK/pull/726?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=compbiomed#diff-Ui9zY0RibEZpbmRlcl9kb3VibGV0RGV0ZWN0aW9uLlI=) | `80.95% <0.00%> (ø)` | | | [R/exportSCEtoTXT.R](https://app.codecov.io/gh/compbiomed/singleCellTK/pull/726?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=compbiomed#diff-Ui9leHBvcnRTQ0V0b1RYVC5S) | `56.41% <50.00%> (-0.17%)` | :arrow_down: | | [R/importGeneSets.R](https://app.codecov.io/gh/compbiomed/singleCellTK/pull/726?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=compbiomed#diff-Ui9pbXBvcnRHZW5lU2V0cy5S) | `70.93% <72.72%> (+0.09%)` | :arrow_up: | | [R/importExampleData.R](https://app.codecov.io/gh/compbiomed/singleCellTK/pull/726?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=compbiomed#diff-Ui9pbXBvcnRFeGFtcGxlRGF0YS5S) | `0.00% <0.00%> (ø)` | | | ... and [11 more](https://app.codecov.io/gh/compbiomed/singleCellTK/pull/726?src=pr&el=tree-more&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=compbiomed) | |

:umbrella: View full report in Codecov by Sentry.
:loudspeaker: Have feedback on the report? Share it here.