TSCAN and Seurat updates

compbiomed / singleCellTK

Interactively analyze single cell genomic data

https://camplab.net/sctk/

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TSCAN and Seurat updates #728

Closed salzcamino closed 8 months ago

salzcamino commented 8 months ago

Added option to select starter cluster in runTSCAN function. Fixed a small bug with plotSeuratGenes, where reducedDims were not passed to the Seurat object, and added a parameter to specify the reducedDimName.

joshua-d-campbell commented 8 months ago

Hey @salzcamino, it looks like there are some issues with the unit tests for this function. Can you check it out?