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compbiomed / singleCellTK

Interactively analyze single cell genomic data
https://camplab.net/sctk/
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singularity container missing package optparse #731

Closed JHYSiu closed 8 months ago

JHYSiu commented 10 months ago

Hi

This may be incompetency on my part, but optparse package seems to be missing from the singularity container?

I pulled it from singularity pull docker://campbio/sctk_qc:2.10.1 today

I was testing if I could mount it with the following: singularity run -B /user/project_name/:/user/project_name/ /user/project_name/packages/singleCellTK/sctk_qc_2.10.1.sif (I tried with another container and that mounted fine)

I'm unable to run it due to the missing optparse package. (other packages such as singleCellTK load fine)

mingl1997 commented 8 months ago

Hello,

We are in the process of releasing a new version and docker that will fix this issue.