Upon performin DecontX analysis using latest docker image of sctk-shiny app I encountered following issue.
Starting DecontX
Thu Feb 8 14:20:10 2024 .. Analyzing all cells
Thu Feb 8 14:20:11 2024 .... Generating UMAP and estimating cell types
Thu Feb 8 14:20:47 2024 !!! Error in irlba::irlba(L, nv = n, nu = 0, maxit = iters): function 'as_cholmod_sparse' not provided by package 'Matrix'
Would be grateful for any help resolving the issue.
KarlKaise
commented
4 months ago
Hello,
Upon performin DecontX analysis using latest docker image of sctk-shiny app I encountered following issue.
Starting DecontX
Thu Feb 8 14:20:10 2024 .. Analyzing all cells Thu Feb 8 14:20:11 2024 .... Generating UMAP and estimating cell types Thu Feb 8 14:20:47 2024 !!! Error in irlba::irlba(L, nv = n, nu = 0, maxit = iters): function 'as_cholmod_sparse' not provided by package 'Matrix'
Would be grateful for any help resolving the issue.