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compgenome365 / TCGA-Assembler-2

TCGA-Assembler 2
GNU General Public License v3.0
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CPTAC data download issue #7

Open chakitarora opened 1 year ago

chakitarora commented 1 year ago

HI,

I'd like to download the TCGA CPTAC data for my project. I was trying with this example code in the manual:

setwd('/Users/chakitarora/Desktop/TCGA-Assembler-2/TCGA-Assembler')

source("Module_A.R") source("Module_B.R")

' set data saving path

sPath1 <- "./QuickStartExample/Part1_DownloadedData" sPath2 <- "./QuickStartExample/Part2_BasicDataProcessingResult" sPath3 <- "./QuickStartExample/Part3_AdvancedDataProcessingResult"

sCancer <- "BRCA"

vPatientID <- c("TCGA-A7-A13F", "TCGA-AO-A12B", "TCGA-AR-A1AP", "TCGAAR- A1AQ", "TCGA-AR-A1AS", "TCGA-AR-A1AV", "TCGA-AR-A1AW", "TCGA-BHA0BZ", "TCGA-BH-A0DD", "TCGA-BH-A0DG")

path_protein_iTRAQ <- DownloadCPTACData(cancerType = sCancer, assayPlatform = "proteome_iTRAQ", inputPatientIDs = vPatientID, saveFolderName = sPath1)

but this throws up the following error:

Error in [.data.frame(d, , vColDes[1]) : undefined columns selected

What is the issue here?