search

compgenomr / book

http://compgenomr.github.io/book
328 stars 284 forks source link

expression data section 4.1.1 #55

Closed fazeln closed 3 years ago

fazeln commented 3 years ago

I cannot find the code used to create 'df' (table for expression data of leukemia patients) in clustering section 4.1.1.

al2na commented 3 years ago

Should be created in earlier sections, are you sure it is not there?

On Wed, Nov 25, 2020 at 8:22 PM fazeln notifications@github.com wrote:

I cannot find the code used to create 'df' (table for expression data of leukemia patients) in clustering section 4.1.1.

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/compgenomr/book/issues/55, or unsubscribe https://github.com/notifications/unsubscribe-auth/AAE32EPKP6MU64NUFIGXQ5TSRVKPXANCNFSM4UCZWMIQ .

-- Sent from mobile, excuse the brevity

fazeln commented 3 years ago

I couldn't find it. Could it have another variable name?

al2na commented 3 years ago

here is how df is created: https://github.com/compgenomr/book/blob/master/04-unsupervisedLearning.Rmd#L26 These are toy examples, I didn't think anybody will want to run the code. In any case, we explain how to make data frames in earlier chapters, if you want to practice just make data frames with random numbers and run the dist() etc.