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compmetagen / micca

micca - MICrobial Community Analysis
http://compmetagen.github.io/micca
GNU General Public License v3.0
20 stars 9 forks source link

issue about installing micca #34

Closed weibokong27 closed 2 years ago

weibokong27 commented 2 years ago

Hi:

Is micca no longer maintained/updated? I keep getting the error installing on Linux:

sudo apt-get update sudo apt-get install build-essential python-numpy gcc gfortran python-dev libblas-dev liblapack-dev cython pkg-config libfreetype6 libfreetype6-dev libpng-dev pip install --upgrade pip pip install 'setuptools >=14.0' pip install micca

So I try to install micca from source, but it also does work:

sudo pip install 'scipy >=0.13.0' 'pandas >=0.17.0' 'matplotlib >=1.3.0' 'biopython >= 1.50' 'cutadapt >=1.9' 'biom-format >=1.3.1' tar -zxvf micca-1.7.2.tar.gz sudo python setup.py install error: Setup script exited with Python 2.7 is no longer supported

Then, I build a python 2.7 environment: conda create -n envpython27 python=2.7 -y conda activate envpython27

Then perform the above installation, still error.

davidealbanese commented 2 years ago

Dear @weibokong27, you can use the Docker image (https://hub.docker.com/r/compmetagen/micca/).