'Filter' returns only FASTA, not FASTQ

compmetagen / micca

micca - MICrobial Community Analysis

http://compmetagen.github.io/micca

GNU General Public License v3.0

20 stars 9 forks source link

'Filter' returns only FASTA, not FASTQ #7

Closed vmikk closed 7 years ago

vmikk commented 8 years ago

Hello! I tried to filter sequences according to the maximum allowed expected error rate and specified the output file to be FASTQ. However, the result appears to be FASTA. I used the following command:

micca filter \
 -i tst.fastq \
 -o tst_filter.fastq \
 -e 1 -m 200

micca v.1.6.0, installed using Docker in Ubuntu. Did I miss something, or it is a bug? Thank you for your help! Vladimir

davidealbanese commented 7 years ago

Dear @vmikk, you need to add the parameter -f fastq.

Sorry for the late reply. Davide