low pass and high pass filtering & ICA-AROMA

compneuro-ncu / fmridenoise

Tool for automatic denoising, denoising strategies comparison, and functional connectivity data quality control.

Apache License 2.0

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low pass and high pass filtering & ICA-AROMA #37

Open lucyjg opened 5 years ago

lucyjg commented 5 years ago

Hello, thanks for developing fmridenoise!

I am using this command line: python -m fmridenoise -p ‘/data/group/edu/ANTS/wk_directories/fmridenoise/pipelines/pipeline-ICA-AROMA_8Phys_4GS.json’ -g ‘/data/group/edu/ANTS/wk_directories/wk_rest_bids/’

Do I now need to add the --use-aroma flag for this? Also, is it possible to change the low and high pass filtering defaults? I want to use a band-pass-filtering frequency range of 0.01-0.08 Hz.

Thanks for any help you can give!

kfinc commented 5 years ago

Hi @lucyjg! Thanks for questions!

For now, you need --use-aroma flag when you want to apply pipeline using ICA-AROMA files.

You can also easily change default filtering using --high-pass 0.01 and --low-pass 0.08.