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compneuro-ncu / fmridenoise

Tool for automatic denoising, denoising strategies comparison, and functional connectivity data quality control.
Apache License 2.0
47 stars 13 forks source link

docker build fails #96

Open hfxcarl opened 3 years ago

hfxcarl commented 3 years ago

Docker build fails after downloading fmridenoise-0.2.1.tar.gz on my Mac OS 10.15.7 with Docker v3.2.2. The output error: $ docker build . [+] Building 8.7s (7/12)
=> [internal] load build definition from Dockerfile 0.0s => => transferring dockerfile: 407B 0.0s => [internal] load .dockerignore 0.0s => => transferring context: 2B 0.0s => [internal] load metadata for docker.io/library/ubuntu:focal 0.0s => [1/8] FROM docker.io/library/ubuntu:focal 0.0s => [internal] load build context 0.8s => => transferring context: 31.67MB 0.7s => [2/8] RUN apt update 7.3s => ERROR [3/8] RUN apt upgrade 1.2s

[3/8] RUN apt upgrade:

5 0.262

5 0.262 WARNING: apt does not have a stable CLI interface. Use with caution in scripts.

5 0.262

5 0.292 Reading package lists...

5 0.926 Building dependency tree...

5 1.061 Reading state information...

5 1.078 Calculating upgrade...

5 1.197 The following packages will be upgraded:

5 1.197 libsystemd0 libudev1 libzstd1

5 1.201 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.

5 1.201 Need to get 592 kB of archives.

5 1.201 After this operation, 2048 B of additional disk space will be used.

5 1.201 Do you want to continue? [Y/n] Abort.

executor failed running [/bin/sh -c apt upgrade]: exit code: 1

hfxcarl commented 3 years ago

It seems the error is with the Dockerfile 'Run apt upgrade' line. Adjusting this to the following fixed the problem. RUN apt-get update && apt-get upgrade -y

keithcdodd commented 2 years ago

Thank you. I downloaded the tar.gz file, latest build. Unzipped it. cd'd into folder. Changed the Docker file within to have the -y within it like you described, then ran Docker build . . And this appears so far to have worked.