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compomics / DeepLC

DeepLC: Retention time prediction for (modified) peptides using Deep Learning.
https://iomics.ugent.be/deeplc
Apache License 2.0
49 stars 18 forks source link

GUI DeepLC errors #71

Closed MassambaNdiaye closed 3 months ago

MassambaNdiaye commented 3 months ago

Here is the error i get while trying to run DeepLC 2024-03-28 17:20:01 - INFO - Using DeepLC version 2.2.27 Traceback (most recent call last): File "deeplc\gui.py", line 38, in File "gooey\python_bindings\gooey_decorator.py", line 134, in File "deeplc\gui.py", line 35, in start_gui File "deeplc__main.py", line 70, in main File "deeplc__main__.py", line 134, in run File "psm_utils\io\init.py", line 151, in read_file File "psm_utils\io\init__.py", line 112, in _infer_filetype psm_utils.io.exceptions.PSMUtilsIOException: Could not infer filetype.

RobbinBouwmeester commented 3 months ago

Dear MassambaNdiaye,

What file are you trying to run through DeepLC? This error relates to an extension of the file that is not recognized by psm_utils.

So best would be if you check out psm_utils and choose a filetype and extension that DeepLC can work with: https://github.com/compomics/psm_utils

Hope that helps.

MassambaNdiaye commented 3 months ago

Dear RobbinBouwmeester, Thank you a lot. I checked my submitted file and find out that the error was not due to file type but to decimal separator type used in my calibration file. Thank you for your help

RobbinBouwmeester commented 3 months ago

Ah great that you resolved it! I will have a look to see if I can throw a better error that is more useful for the user.