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compomics / DeepLC

DeepLC: Retention time prediction for (modified) peptides using Deep Learning.
https://iomics.ugent.be/deeplc
Apache License 2.0
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Documentation: table of peptide properties of training data sets #73

Closed vrkosk closed 3 months ago

vrkosk commented 4 months ago

Could you add a table to the documentation that better summarises the available models? Something analogous to the MS2PIP model table: https://github.com/compomics/ms2pip?tab=readme-ov-file#specialized-prediction-models

For example, I can try to find out what full_hc_PXD008783_median_calibrate is based on by looking at the data set info in PRIDE, but I don't know what median calibrate means. Or in full_hc_Xbridge_fixed_mods, what fixed mods is it referring to and does Xbridge mean disulfide bridge or something else? What I'd most like to know is enzyme, species and type of LC.

RobbinBouwmeester commented 4 months ago

Hey, yes sure. I should update these anyway, since a lot has changed lately. I will set a reminder mid-june.

RobbinBouwmeester commented 3 months ago

Should be fixed in https://github.com/compomics/DeepLC/commit/eb9aa60c3d666ba277f6da8669a85f8fa0f871b4