Closed CarlaCristinaUranga closed 7 years ago
Hi Carla,
Thanks for telling us about this. Can you try this beta version of DeNovoGUI to see if it solves the issues: http://vedlegg.uib.no/?id=7080f7010df83e57123adf4612bbd01b?
Best regards, Harald
Sure, I love these proteomics tools quite a bit, there are so many shortcuts I wish they had for post-sequencing analysis. I wish I knew how to program! The Beta version did work, except that pNovo is still not activating or working, so I am going with Novor and PepNovo for now. Thanks again.
Best wishes,
Carla Uranga
Hi Carla,
DeNovoGUI v1.15.0 has just been released fixing the issues with the command line.
Best regards, Harald
Super sweet, you guys are fast, looking forward to trying it out! Do you guys have any proteomics tools for differential expression? Best wishes and greetings from a member of the science rebellion in Mexico!
On Jan 31, 2017 6:26 AM, "Harald Barsnes" notifications@github.com wrote:
Hi Carla,
DeNovoGUI v1.15.0 has just been released fixing the issues with the command line.
Best regards, Harald
— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/compomics/compomics-utilities/issues/15#issuecomment-276376700, or mute the thread https://github.com/notifications/unsubscribe-auth/AVXji1UXLQw_ocujw8wJVyjRTLUYl4Zqks5rX0SOgaJpZM4Lo43O .
Hi Carla,
The only thing we have at the moment is Reporter (http://compomics.github.io/projects/reporter.html) for iTRAQ and TMT quantification.
Best regards, Harald
So there is nothing for empai yet? Or based on spectral counts?
Best wishes,
Carla
On Jan 31, 2017 6:42 AM, "Harald Barsnes" notifications@github.com wrote:
Hi Carla,
The only thing we have at the moment is Reporter ( http://compomics.github.io/projects/reporter.html) for iTRAQ and TMT quantification.
Best regards, Harald
— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/compomics/compomics-utilities/issues/15#issuecomment-276381209, or mute the thread https://github.com/notifications/unsubscribe-auth/AVXji_6ov-Hw614zTSDbEtNHkCOJrMbaks5rX0hfgaJpZM4Lo43O .
Hi Carla,
Spectral counting is included in PeptideShaker. You can choose between emPAI or NSAF. See the column called "MS2 Quant".
Best regards, Harald
Hi, I am not having any luck with DeNovoGUI command line interface. I get the following errors for the identification parameter CLI: denovopar.txt
I get the following error message with the DeNovoGUI CLI: ucd256ma_denovo.txt
I tried un-installing and then re-installing DeNovoGUI-1.14.5 to no avail. Thank you in advance for your help!
Best wishes,
Carla Uranga