Closed GoogleCodeExporter closed 8 years ago
Thanks for telling us about this. However, I'm not really sure which tool it is
you are trying to start? Are you referring to the compomics-utilities demo? If
so, how are you trying to start the tool? As written in the Download section we
strongly recommend using Maven for this purpose.
Also note that compomics-utilities is mainly a backend library for developers.
If you're not a developer, I'd recommend rather looking at our more end user
oriented projects like SearchGUI (http://searchgui.googlecode.com) and
PeptideShaker (http://peptide-shaker.googlecode.com).
Original comment by harald.b...@gmail.com
on 11 Jul 2015 at 8:08
I was trying to initiate the SearchGUI-1.30.1.jar file and the
PeptideShaker-0.41.1.jar files, unfortunately for both applications ended up
without initiating them properly giving following log file,
Strtup log file
"Memory settings read from the user preferences: 3072
args:
original java.home: C:\Program Files\Java\jre1.8.0_45\bin\
new java.home: C:\Program Files\Java\jre1.8.0_45\bin\
Command line:
"C:\Program Files\Java\jre1.8.0_45\bin\java"
-splash:resources\conf\peptide-shaker-splash.png -Xms128M -Xmx3072M -cp
"E:\Research Proposal\Proteomis\Bioinformatics for proteomics\Software
collection\PeptideShaker-0.41.1\PeptideShaker-0.41.1\PeptideShaker-0.41.1.jar"
eu.isas.peptideshaker.gui.PeptideShakerGUI
Process exitValue: 1"
My computer operating system is Windows 7, 32 bit and the Java version is
"1.8.0_45-b15" and probably the 32 bit, because i have installed 32 bit version
of the Java application in to the OS.
Please be kind enough to be help in this cause.
Thanking you
Original comment by rmcjband...@gmail.com
on 11 Jul 2015 at 9:39
The problem is that you are trying to use more memory than a 32 bit system is
able to. 32 bit systems can use maximum 2 GB of memory, while you're trying to
start the tools with 3 GB.
Could you try deleting the file userpreferences.cup located in a folder called
".compomics", which you should find in your user home folder (usually in
"C:\Users\"your user name"\). And then try starting the tools again.
If it still does not work you can try setting the memory manually. Please see
http://code.google.com/p/peptide-shaker/issues/detail?id=87#c1 for more details.
Original comment by harald.b...@gmail.com
on 12 Jul 2015 at 11:39
This issue was solved in later versions of the library. If this is not the case, please let us know and we'll reopen the issue.
Original issue reported on code.google.com by
rmcjband...@gmail.com
on 9 Jul 2015 at 6:06