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compomics / compomics-utilities

Open source Java library for computational proteomics
http://compomics.github.io/projects/compomics-utilities.html
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IdentificationParametersCLI bug saving .par file in SearchGUI 2.3.0 #9

Closed im281 closed 8 years ago

im281 commented 8 years ago

IdentificationParametersCLI -out gives error below.

It appears that a input.par file created by the GUI can also not be edited and saved

SearchGUI-2.3.0>java -cp SearchGUI-2.3.0.jar eu.isas.searchgui.cmd.IdentificationParametersCLI -db "C:\folder\myo.fasta" -out "C:/Users//Documents/idparams.par"

java.lang.NullPointerException at com.compomics.util.preferences.IdentificationParameters.saveIdentificationParameters(IdentificationParameters.java:421) at com.compomics.util.experiment.identification.parameters_cli.AbstractIdentificationParametersCli.call(AbstractIdentificationParametersCli.java:116) at com.compomics.util.experiment.identification.parameters_cli.AbstractIdentificationParametersCli.initiate(AbstractIdentificationParametersCli.java:93) at eu.isas.searchgui.cmd.IdentificationParametersCLI.(IdentificationParametersCLI.java:25) at eu.isas.searchgui.cmd.IdentificationParametersCLI.main(IdentificationParametersCLI.java:36)

hbarsnes commented 8 years ago

This is the same issue as reported in https://github.com/compomics/compomics-utilities/issues/8. I'm therefore closing this issue in order to avoid duplicate answers. Please refer to the above issue for further information on the reported issue.