compomics / denovogui

Graphical user interface for de novo sequencing of tandem mass spectra
http://compomics.github.io/projects/denovogui.html
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NullPointerException in DeNovoGUI-1.16.4 IdentificationParametersCLI #42

Closed semiller10 closed 5 years ago

semiller10 commented 5 years ago

Hello! I encounter an error when attempting to generate a parameters file using DeNovoGUI v1.16.3 and v1.16.4 (Linux), but not v1.16.2.

>java -cp /path/to/DeNovoGUI-1.16.4/DeNovoGUI-1.16.4.jar com.compomics.denovogui.cmd.IdentificationParametersCLI -out /path/to/params.out -prec_tol 20 -frag_tol 0.5 -fixed_mods "Carbamidomethylation of C" -variable_mods "Oxidation of M" -pepnovo_hitlist_length 20 -novor_fragmentation HCD -novor_mass_analyzer FT

java.lang.NullPointerException at com.compomics.denovogui.cmd.PathSettingsCLI.setPathSettings(PathSettingsCLI.java:106) at com.compomics.denovogui.cmd.PathSettingsCLI.extractAndUpdatePathOptions(PathSettingsCLI.java:240) at com.compomics.denovogui.cmd.IdentificationParametersCLI.<init>(IdentificationParametersCLI.java:34) at com.compomics.denovogui.cmd.IdentificationParametersCLI.main(IdentificationParametersCLI.java:50)

Thank you very much, Sam

CarlosHorro commented 5 years ago

Hi,

Thank you very much for the details, we are already working on solving it as soon as possible.

Greetings, Carlos

CarlosHorro commented 5 years ago

Hi again,

We have solved the issue, but, as we cannot temporarily deploy a new version, I've made available to you a DeNovoGUI v1.16.4 with that error fixed, via Dropbox:

Windows: https://www.dropbox.com/s/09xxx9detwquuyp/DeNovoGUI-1.16.4-windows.zip?dl=0

Linux & Mac: https://www.dropbox.com/s/9zb0lkegxif1cmk/DeNovoGUI-1.16.4-mac_and_linux.tar.gz?dl=0

Greetings, Carlos

semiller10 commented 5 years ago

Thanks, I'll give it a spin.