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compomics / denovogui

Graphical user interface for de novo sequencing of tandem mass spectra
http://compomics.github.io/projects/denovogui.html
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Peptide match: missing results #6

Closed GoogleCodeExporter closed 9 years ago

GoogleCodeExporter commented 9 years ago 
What steps will reproduce the problem?
1. Run peptide match (cutoff >100 for 1 peptide sequence per spectrum)
2. Run mouse Fasta DB

What is the expected output? What do you see instead?
I expected to see the results (peptide matches) in the .txt file, but instead 
see an empty file (just the column headers!) 

What version of the product are you using? On what operating system?
1.3.6 on Windows 7 64bit

Please provide any additional information below.
No error was genetated in the bug report

Original issue reported on code.google.com by ale.coh...@gmail.com on 9 Apr 2014 at 7:10

GoogleCodeExporter commented 9 years ago 
That is strange. Works fine on our side. Which sequencing settings do you use? 
As some of these are also used when mapping to the FASTA file. In particular 
the fragment ion accuracy.

Original comment by harald.b...@gmail.com on 9 Apr 2014 at 9:58

GoogleCodeExporter commented 9 years ago 
I found and fixed a bug in the peptide matches export filters. Could you try 
the new version and see if it fixes your issue?

Original comment by harald.b...@gmail.com on 9 Apr 2014 at 11:34

GoogleCodeExporter commented 9 years ago 
Yup, issue fixed... Although I got a very small list of peptides, but it
could be an issue with me db parameters... let me look into this.

Alex

Original comment by ale.coh...@gmail.com on 10 Apr 2014 at 2:46

GoogleCodeExporter commented 9 years ago

Original comment by harald.b...@gmail.com on 10 Apr 2014 at 4:31