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compomics / meta-proteome-analyzer

MetaProteomeAnalyzer (MPA) software for analyzing and visualizing MS-based metaproteomics data.
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Changing Mascot mDAT file input settings causing exception #3

Closed GoogleCodeExporter closed 9 years ago

GoogleCodeExporter commented 9 years ago 
What steps will reproduce the problem?
1. Create new Project + Experiment, go to file input panel
2. "Add from File..." + open any mDAT file, when fully loaded to Input Spectra 
Panel, open "MASCOT Advanced Parameters" (green cogwheel @ Search Engines)
3. Switching from PepScore 15 to FDR 5% + Apply changes -> Exception

What is the expected output? What do you see instead?
Popup should close and apply changes -> window does not close using "Ok" button

What version of the product are you using? On what operating system?
1.0.2, Server + Client on local device

Please provide any additional information below.
Exception as follows:
Exception in thread "AWT-EventQueue-0" java.lang.ClassCastException: 
javax.swing.JPanel cannot be cast to [[Ljava.lang.Object;
    at de.mpa.client.ui.dialogs.AdvancedSettingsDialog.applyChanges(AdvancedSettingsDialog.java:334)
    at de.mpa.client.ui.dialogs.AdvancedSettingsDialog.access$0(AdvancedSettingsDialog.java:308)
    at de.mpa.client.ui.dialogs.AdvancedSettingsDialog$4.actionPerformed(AdvancedSettingsDialog.java:268)
    at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2018)
    at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2341)
    at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:402)
    at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:259)
    at javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:252)
    at java.awt.Component.processMouseEvent(Component.java:6505)
    at javax.swing.JComponent.processMouseEvent(JComponent.java:3321)
    at java.awt.Component.processEvent(Component.java:6270)
    at java.awt.Container.processEvent(Container.java:2229)
    at java.awt.Component.dispatchEventImpl(Component.java:4861)
    at java.awt.Container.dispatchEventImpl(Container.java:2287)
    at java.awt.Component.dispatchEvent(Component.java:4687)
    at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4832)
    at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4492)
    at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4422)
    at java.awt.Container.dispatchEventImpl(Container.java:2273)
    at java.awt.Window.dispatchEventImpl(Window.java:2719)
    at java.awt.Component.dispatchEvent(Component.java:4687)
    at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:729)
    at java.awt.EventQueue.access$200(EventQueue.java:103)
    at java.awt.EventQueue$3.run(EventQueue.java:688)
    at java.awt.EventQueue$3.run(EventQueue.java:686)
    at java.security.AccessController.doPrivileged(Native Method)
    at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:76)
    at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:87)
    at java.awt.EventQueue$4.run(EventQueue.java:702)
    at java.awt.EventQueue$4.run(EventQueue.java:700)
    at java.security.AccessController.doPrivileged(Native Method)
    at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:76)
    at java.awt.EventQueue.dispatchEvent(EventQueue.java:699)
    at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:242)
    at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:161)
    at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:154)
    at java.awt.WaitDispatchSupport$2.run(WaitDispatchSupport.java:182)
    at java.awt.WaitDispatchSupport$4.run(WaitDispatchSupport.java:221)
    at java.security.AccessController.doPrivileged(Native Method)
    at java.awt.WaitDispatchSupport.enter(WaitDispatchSupport.java:219)
    at java.awt.Dialog.show(Dialog.java:1082)
    at java.awt.Component.show(Component.java:1651)
    at java.awt.Component.setVisible(Component.java:1603)
    at java.awt.Window.setVisible(Window.java:1014)
    at java.awt.Dialog.setVisible(Dialog.java:1005)
    at de.mpa.client.ui.dialogs.AdvancedSettingsDialog.<init>(AdvancedSettingsDialog.java:108)
    at de.mpa.client.ui.dialogs.AdvancedSettingsDialog.showDialog(AdvancedSettingsDialog.java:121)
    at de.mpa.client.ui.panels.DatabaseSearchSettingsPanel$9.actionPerformed(DatabaseSearchSettingsPanel.java:317)
    at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2018)
    at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2341)
    at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:402)
    at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:259)
    at javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:252)
    at java.awt.Component.processMouseEvent(Component.java:6505)
    at javax.swing.JComponent.processMouseEvent(JComponent.java:3321)
    at java.awt.Component.processEvent(Component.java:6270)
    at java.awt.Container.processEvent(Container.java:2229)
    at java.awt.Component.dispatchEventImpl(Component.java:4861)
    at java.awt.Container.dispatchEventImpl(Container.java:2287)
    at java.awt.Component.dispatchEvent(Component.java:4687)
    at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4832)
    at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4492)
    at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4422)
    at java.awt.Container.dispatchEventImpl(Container.java:2273)
    at java.awt.Window.dispatchEventImpl(Window.java:2719)
    at java.awt.Component.dispatchEvent(Component.java:4687)
    at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:729)
    at java.awt.EventQueue.access$200(EventQueue.java:103)
    at java.awt.EventQueue$3.run(EventQueue.java:688)
    at java.awt.EventQueue$3.run(EventQueue.java:686)
    at java.security.AccessController.doPrivileged(Native Method)
    at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:76)
    at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:87)
    at java.awt.EventQueue$4.run(EventQueue.java:702)
    at java.awt.EventQueue$4.run(EventQueue.java:700)
    at java.security.AccessController.doPrivileged(Native Method)
    at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:76)
    at java.awt.EventQueue.dispatchEvent(EventQueue.java:699)
    at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:242)
    at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:161)
    at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:150)
    at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:146)
    at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:138)
    at java.awt.EventDispatchThread.run(EventDispatchThread.java:91)

Original issue reported on code.google.com by fko...@googlemail.com on 27 Oct 2014 at 9:24

GoogleCodeExporter commented 9 years ago

Original comment by Thilo.M...@gmx.de on 6 May 2015 at 2:13