moff installation problems

[assafkacen]

Hi, I am trying to install the moff module. the pymzml package support only python ver 3.4 so I convert the moff.py module to run in python 3.X, It keeps give me errors when I try to work with mzML file. is this the latest version of the code? can you tell me what should be the command line to activate the moff on mzML file?

thanks Assaf

[bgruening]

How are you installing moff? Have you tried using bioconda? https://bioconda.github.io/recipes/moff/README.html

[assafkacen]

Yes – it couldn’t find the package in bioconda channel. I downloaded the package but the code contain many bugs and fail to run – that why I suspect I didn’t download the relevant version. I can send you a list of bugs if its help..

From: Björn Grüning notifications@github.com Sent: Monday, August 6, 2018 12:17 AM To: compomics/moFF moFF@noreply.github.com Cc: Assaf Kacen assaf.kacen@weizmann.ac.il; Author author@noreply.github.com Subject: Re: [compomics/moFF] moff installation problems (#30)

How are you installing moff? Have you tried using bioconda? https://bioconda.github.io/recipes/moff/README.html

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[Maux82]

Hi @assafkacen ,

One way to install it and using mzML file, is to install the old version of pymzML that should be still available. Unfortunatly, the new version of pymzML is only available for python 3 but the moving of moFF python 3 is still in our to-do-list.

[caleb-easterly]

Hi @assafkacen,

re: moFF in bioconda - it should be there. Did you add bioconda to the list of channels? The instructions are in https://bioconda.github.io/index.html#set-up-channels

Caleb