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compomics / moFF

A modest Feature Finder (moFF) to extract MS1 intensities from Thermo raw file
Apache License 2.0
33 stars 11 forks source link

Quantitation of Peptides and Proteins #5

Closed Stortebecker closed 7 years ago

Stortebecker commented 7 years ago

Do you have recommendations on how to map MoFF PSM quantitations on peptides and finally on proteins?

Maux82 commented 7 years ago

Hi, moFF has been designed just to extract the MS1 intensities, but its output can be easily integrated in other statistical sw such as Perseus or R.

At the moment I do not have any specific recommendation, but in the next future we are planning to integrate moFF output into this novel peptide-based quantification approach

Stortebecker commented 7 years ago

At the moment I do not have any specific recommendation, but in the next future we are planning to integrate moFF output into this novel peptide-based quantification approach

Sounds great! Is the approach you cited already available as a software? I could not find it.

Maux82 commented 7 years ago

Here we go : https://github.com/ludgergoeminne/MSqRob if you have questions you can contact the author