Re-implement "split parsing modifications from applying them"

compomics / ms2pip

MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.

https://ms2pip.readthedocs.io

Apache License 2.0

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Re-implement "split parsing modifications from applying them" #133

Closed RalfG closed 1 year ago

RalfG commented 3 years ago

Note that 80ea38289cf8d3351a7c213835bf075ec10ec042 might still be interesting, but it breaks quite a few output formats at the moment, so lets revert those changes for now.

_Originally posted by @paretje in https://github.com/compomics/ms2pip_c/issues/132#issuecomment-769834249_