Closed RalfG closed 2 years ago
To enable DeepLC calibration and other DeepLC options in fasta2speclib, the fasta2speclib config (from json file) should be passed to the ms2pip.retention_time module:
ms2pip.retention_time
Replace this line: https://github.com/compomics/ms2pip_c/blob/2e0c2af34d9d81317a5313b837d9d4111a96981f/fasta2speclib/fasta2speclib.py#L342
With
rt_predictor = RetentionTime(config=params)
This makes it possible to add a deeplc entry to the fasta2speclib config file:
deeplc
{ ... "elude_model_file":null, "rt_predictions_file":null, "add_retention_time":true, "deeplc": { "calibration_file": "/path/to/deeplc/peptide/file.csv" } }
Other options under “deeplc" could be any option from the DeepLC API.
Was already fixed in #135.
To enable DeepLC calibration and other DeepLC options in fasta2speclib, the fasta2speclib config (from json file) should be passed to the
ms2pip.retention_time
module:Replace this line: https://github.com/compomics/ms2pip_c/blob/2e0c2af34d9d81317a5313b837d9d4111a96981f/fasta2speclib/fasta2speclib.py#L342
With
This makes it possible to add a
deeplc
entry to the fasta2speclib config file:Other options under “deeplc" could be any option from the DeepLC API.