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compomics / ms2pip

MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.
https://ms2pip.readthedocs.io
Apache License 2.0
35 stars 18 forks source link

custom FASTA #212

Closed Kokoushin closed 5 months ago

Kokoushin commented 6 months ago

Hi,

I attempted to process a custom FASTA file using the online "From protein FASTA file".

The processing of FASTA_A was successful, but for FASTA_B, it displayed "Something went wrong. FASTA_A.txt FASTA_B.txt

Kokoushin commented 6 months ago

Since GitHub does not support uploading FASTA files, I converted them to TXT format.

RalfG commented 6 months ago

Hi @Kokoushin,

Thanks for using MS²PIP! I noticed there is a * in FASTA_B. This most likely represents 'any' amino acid, but that is not supported by MS²PIP.

Best, Ralf

RalfG commented 6 months ago

After removing the protein with the *, this is the result: https://iomics.ugent.be/ms2pip/result/83fe9c97-e7ab-458d-b014-e2f1a630aeb1