RalfG
commented
2 weeks ago Hi @ZhaoYaniBruker,
For simple usage, it is easier to install ms2pip from PyPI with
pip install ms2pipIf you do wish to install MS²PIP from source (for instance for development) as you did, ensure that Git Large File Storage (LFS) is installed on your system. Some files (older models in C) have been uploaded to GitHub with LFS.
After installing Git LFS, fetch and checkout the LFS files in the repo:
git lfs fetch
git lfs checkoutTo validate that the LFS checkout went correctly, you can check that the top of the file ms2pip/_models_c/HCD-2019/model_20190107_HCD_train_B.c looks like this:
#include "../HCD-2019.h"
float score_HCD_B(unsigned int* v){
float s = 0.;
if (v[27]<6){
...If it looks like this:
version https://git-lfs.github.com/spec/v1
oid sha256:d0ab6fdc7c3b2324228912757d1c55bd56fdebbe066a0b5fc0305f0c7bbb9969
size 8726156the repo was not cloned with LFS and MS²PIP won't compile.
Best, Ralf
Dear developpers,
I git clone the latest compomics, and git checkout v4.0.0. Then, I tried to install it in ms2pip folder via: pip install . It gives me the following error message. I use python3.8.
Best regards.