Scipy dependency issue in Windows Installer for v3.0.3

[RalfG]

Hi, ralph Hope you are doing well,

First, since I was testing your windows installation to make a protocol for a gui user, things like pip are not used.

Now, I just tried reinstalling the .exe file for version 3.0.3 and the program wont open after the installation for me to retest everything and give you more info heres the error i encounter right now'

if i scroll at the end i see

Click to expand

` Traceback (most recent call last): File "ms2rescore\gui\__main__.py", line 7, in from ms2rescore.gui.app import app File "PyInstaller\loader\pyimod02_importers.py", line 419, in exec_module File "ms2rescore\__init__.py", line 16, in from ms2rescore.core import rescore # noqa: F401 E402 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "PyInstaller\loader\pyimod02_importers.py", line 419, in exec_module File "ms2rescore\core.py", line 9, in from ms2rescore.feature_generators import FEATURE_GENERATORS File "PyInstaller\loader\pyimod02_importers.py", line 419, in exec_module File "ms2rescore\feature_generators\__init__.py", line 9, in from ms2rescore.feature_generators.ms2pip import MS2PIPFeatureGenerator File "PyInstaller\loader\pyimod02_importers.py", line 419, in exec_module File "ms2rescore\feature_generators\ms2pip.py", line 34, in from ms2pip import correlate File "PyInstaller\loader\pyimod02_importers.py", line 419, in exec_module File "ms2pip\__init__.py", line 13, in from ms2pip.core import ( # noqa: F401 E402 File "PyInstaller\loader\pyimod02_importers.py", line 419, in exec_module File "ms2pip\core.py", line 25, in from ms2pip._utils.xgb_models import get_predictions_xgb, validate_requested_xgb_model File "PyInstaller\loader\pyimod02_importers.py", line 419, in exec_module File "ms2pip\_utils\xgb_models.py", line 10, in import xgboost as xgb File "PyInstaller\loader\pyimod02_importers.py", line 419, in exec_module File "xgboost\__init__.py", line 7, in from . import collective, dask, rabit File "PyInstaller\loader\pyimod02_importers.py", line 419, in exec_module File "xgboost\dask.py", line 77, in from .sklearn import ( File "PyInstaller\loader\pyimod02_importers.py", line 419, in exec_module File "xgboost\sklearn.py", line 22, in from scipy.special import softmax File "PyInstaller\loader\pyimod02_importers.py", line 419, in exec_module File "scipy\special\__init__.py", line 777, in File "scipy\\special\\_ufuncs.pyx", line 1, in init scipy.special._ufuncs ModuleNotFoundError: No module named 'scipy.special._cdflib'`

If youd like me to open a different issue for this particuliar issue, just ask

If testing and fixing the windows gui version isnt a priority right now I am ok to wait until it is

Thanks a lot

Originally posted by @NicolasProvencher in https://github.com/compomics/ms2rescore/issues/108#issuecomment-2043214323

[RalfG]

Issue was caused by a change from Scipy 1.12 to 1.13 and PyInstaller not being updated yet. A fix should be included in the next PyInstaller release (https://github.com/pyinstaller/pyinstaller/commit/5fe069177c9fda8ae7e362cdaa5b39c5b64fe4f5).

[NicolasProvencher]

Hi issue seems to be fixed. For the deeplc analysis i am starting a run, I will update its issue soon

Thanks for the help :)