Hi Ralf. A user posted an issue on the Comet repository about pushing Comet's output through MS2Rescore. The post was with respect to changing Comet's output to be compatible with MS2Rescore. But after downloading MS2Rescore myself, it seems like one of Comet's pepXML or mzid outputs might have a chance of working. So I just tried a simple analysis and get these errors below using either the pepXML or mzid files as input. The zip file has the two identification files as well as the target+decoy yeast fasta. I'm less confident of Comet's mzid output as I don't use that format but Comet's pepXML output has been used for ages. Let me know if there's any hope of processing Comet's output through your tool. If not, I'll break the bad news to the user. Thanks!
Hi Ralf. A user posted an issue on the Comet repository about pushing Comet's output through MS2Rescore. The post was with respect to changing Comet's output to be compatible with MS2Rescore. But after downloading MS2Rescore myself, it seems like one of Comet's pepXML or mzid outputs might have a chance of working. So I just tried a simple analysis and get these errors below using either the pepXML or mzid files as input. The zip file has the two identification files as well as the target+decoy yeast fasta. I'm less confident of Comet's mzid output as I don't use that format but Comet's pepXML output has been used for ages. Let me know if there's any hope of processing Comet's output through your tool. If not, I'll break the bad news to the user. Thanks!
pepXML log:
mzid log:
comet_example.zip