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compomics / ms2rescore

Modular and user-friendly platform for AI-assisted rescoring of peptide identifications
https://ms2rescore.readthedocs.io
Apache License 2.0
39 stars 14 forks source link

Target-decoy competition settings #153

Open MatteoLacki opened 1 month ago

MatteoLacki commented 1 month ago

Hi,

I have navigated the docs a bit and cannot find any passage about what options does one have when it comes to using target-decoy competition. What strategy is used by default? How can one modify the target FDR filter value from the standard 1%?

Best wishes, Matteo Lacki