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compomics
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ms2rescore
Modular and user-friendly platform for AI-assisted rescoring of peptide identifications
https://ms2rescore.readthedocs.io
Apache License 2.0
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Minor improvements, bugfixes and updated docs, following #14 and #17
#18
Closed
RalfG
closed
3 years ago
RalfG
commented
3 years ago
New
Simplified documentation, with auto-generated markdown from JSON schema, using
jsonschema2md
Improvements
MaxQuantPipeline: add pseudocount to TIC calculation
rescore_core: Implemented more flexible, less error-prone feature column selection and merging in
write_pin_files()
Use named logger instead of logging module
Fixes
Manifest: Fix file paths
MaxQuantPipeline: add charge column to features, improve feature column names
TandemPipeline: add missing Label column to peprec, logging improvements
percolator: prefer
hyperscore
over
Score
in peprec, logging improvements
__init__: use mkdtemp instead of TemporaryDirectory to be consistent with user-given tmp dir
config_parser: Fix reading of package_data default config and schema
Config schema: Add required general properties
Default config: Add empty percolator object
New
Improvements
write_pin_files()
Fixes
hyperscore
overScore
in peprec, logging improvements