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compomics / ms2rescore

Modular and user-friendly platform for AI-assisted rescoring of peptide identifications
https://ms2rescore.readthedocs.io
Apache License 2.0
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num_cpus used by MS2PIP #25

Closed tivdnbos closed 3 years ago

tivdnbos commented 3 years ago

MS2PIP takes the default of 8 CPUs instead of taking the user defined option in config file

2021-02-05 08:57:40 // INFO // numexpr.utils // Note: NumExpr detected 32 cores but "NUMEXPR_MAX_THREADS" not set, so enforcing safe limit of 8. 2021-02-05 08:57:40 // INFO // numexpr.utils // NumExpr defaulting to 8 threads.

tivdnbos commented 3 years ago

Update: num_cpus should read "-1" as all available (positive integers currently work).

RalfG commented 3 years ago

This is a DeepLC/TensorFlow issue, not MS²PIP/MS²ReScore. Opened a new issue here: https://github.com/compomics/DeepLC/issues/19#issue-803484251

-1 should already be converted to all available CPUs: https://github.com/compomics/ms2rescore/blob/67d5b819e150c422a7ffb2bada19a93936dbd960/ms2rescore/config_parser.py#L102-L109