hbarsnes
commented
5 years ago Hi,
First, please verify that you are in fact giving PeptideShaker 33 GB of memory (https://github.com/compomics/compomics-utilities/wiki/JavaTroubleShooting#memory-issues) and that you are using Java 64 bit (https://github.com/compomics/compomics-utilities/wiki/JavaTroubleShooting#32-bit-or-64-bit).
If you are, and increasing the memory provided is not an option, I'd consider loading the data from only one of the two search engines. The results will usually not be that different anyway. You can also try going to the Advanced Settings section in the Identification Settings dialog, click the PTM Localization button and set the Probabilistic Score to "None".
Best regards, Harald
02071974
070274
Help! My work ended with Java memory problems (using Java 8 update11 with max 33GB of RAM). Full report; "# ------------------------------------------------------------------
PeptideShaker 1.16.38 Report File
#
Originally saved by: workstation @ lx-2xzpm2
on: 02 May 2019, 16:38
as: PeptideShkaker 1.16.38_Error 2_Sofia Neves.txt
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Thu May 02 11:02:13 BST 2019 Import process for Second Hand Smoke (Sample: Human Nasal Epithelium, Replicate: 0)
Thu May 02 11:02:13 BST 2019 Importing sequences from 2018,_with_porcine_trypsine_concatenated_target_decoy.fasta. Thu May 02 11:02:53 BST 2019 FASTA file import completed. Thu May 02 11:02:53 BST 2019 Importing gene mappings. Thu May 02 11:02:56 BST 2019 Establishing local database connection. Thu May 02 11:03:02 BST 2019 Reading identification files. Thu May 02 11:03:02 BST 2019 Parsing 131104_NB10_01.ms-amanda.csv. Thu May 02 11:03:03 BST 2019 Loading spectra for 131104_NB10_01.ms-amanda.csv. Thu May 02 11:03:03 BST 2019 Importing 131104_NB10_01.mgf Thu May 02 11:03:03 BST 2019 131104_NB10_01.mgf imported. Thu May 02 11:03:03 BST 2019 Collecting peptides to map. Thu May 02 11:03:03 BST 2019 Mapping peptides to proteins. Thu May 02 11:03:03 BST 2019 Importing PSMs from 131104_NB10_01.ms-amanda.csv Thu May 02 11:03:04 BST 2019 1 identified spectra (0.0%) did not present a valid peptide. Thu May 02 11:03:04 BST 2019 3089 of the best scoring peptides were excluded by the import filters: Thu May 02 11:03:04 BST 2019 - 99.8% peptide length less than 8 or greater than 30. Thu May 02 11:03:04 BST 2019 Parsing 131104_NB10_01.msgf.mzid. Thu May 02 11:03:06 BST 2019 Loading spectra for 131104_NB10_01.msgf.mzid. Thu May 02 11:03:06 BST 2019 Collecting peptides to map. Thu May 02 11:03:06 BST 2019 Mapping peptides to proteins. Thu May 02 11:03:06 BST 2019 Importing PSMs from 131104_NB10_01.msgf.mzid Thu May 02 11:03:08 BST 2019 Parsing 131104_NB11_01.ms-amanda.csv. Thu May 02 11:03:08 BST 2019 Loading spectra for 131104_NB11_01.ms-amanda.csv. Thu May 02 11:03:08 BST 2019 Importing 131104_NB11_01.mgf Thu May 02 11:03:08 BST 2019 131104_NB11_01.mgf imported. Thu May 02 11:03:08 BST 2019 Collecting peptides to map. Thu May 02 11:03:08 BST 2019 Mapping peptides to proteins. Thu May 02 11:03:08 BST 2019 Importing PSMs from 131104_NB11_01.ms-amanda.csv Thu May 02 11:03:09 BST 2019 Parsing 131104_NB11_01.msgf.mzid. Thu May 02 11:03:11 BST 2019 Loading spectra for 131104_NB11_01.msgf.mzid. Thu May 02 11:03:11 BST 2019 Collecting peptides to map. Thu May 02 11:03:11 BST 2019 Mapping peptides to proteins. Thu May 02 11:03:11 BST 2019 Importing PSMs from 131104_NB11_01.msgf.mzid Thu May 02 11:03:13 BST 2019 Parsing 131104_NB12_01.ms-amanda.csv. Thu May 02 11:03:13 BST 2019 Loading spectra for 131104_NB12_01.ms-amanda.csv. Thu May 02 11:03:13 BST 2019 Importing 131104_NB12_01.mgf Thu May 02 11:03:13 BST 2019 131104_NB12_01.mgf imported. Thu May 02 11:03:13 BST 2019 Collecting peptides to map. Thu May 02 11:03:13 BST 2019 Mapping peptides to proteins. Thu May 02 11:03:13 BST 2019 Importing PSMs from 131104_NB12_01.ms-amanda.csv Thu May 02 11:03:14 BST 2019 Parsing 131104_NB12_01.msgf.mzid. Thu May 02 11:03:16 BST 2019 Loading spectra for 131104_NB12_01.msgf.mzid. Thu May 02 11:03:16 BST 2019 Collecting peptides to map. Thu May 02 11:03:16 BST 2019 Mapping peptides to proteins. Thu May 02 11:03:16 BST 2019 Importing PSMs from 131104_NB12_01.msgf.mzid Thu May 02 11:03:18 BST 2019 Parsing 131104_NB13_01.ms-amanda.csv. Thu May 02 11:03:18 BST 2019 Loading spectra for 131104_NB13_01.ms-amanda.csv. Thu May 02 11:03:18 BST 2019 Importing 131104_NB13_01.mgf Thu May 02 11:03:18 BST 2019 131104_NB13_01.mgf imported. Thu May 02 11:03:18 BST 2019 Collecting peptides to map. Thu May 02 11:03:18 BST 2019 Mapping peptides to proteins. Thu May 02 11:03:18 BST 2019 Importing PSMs from 131104_NB13_01.ms-amanda.csv Thu May 02 11:03:19 BST 2019 Parsing 131104_NB13_01.msgf.mzid. Thu May 02 11:03:21 BST 2019 Loading spectra for 131104_NB13_01.msgf.mzid. Thu May 02 11:03:21 BST 2019 Collecting peptides to map. Thu May 02 11:03:21 BST 2019 Mapping peptides to proteins. Thu May 02 11:03:21 BST 2019 Importing PSMs from 131104_NB13_01.msgf.mzid Thu May 02 11:03:22 BST 2019 Parsing 131104_NB14_01.ms-amanda.csv. Thu May 02 11:03:22 BST 2019 Loading spectra for 131104_NB14_01.ms-amanda.csv. Thu May 02 11:03:22 BST 2019 Importing 131104_NB14_01.mgf Thu May 02 11:03:23 BST 2019 131104_NB14_01.mgf imported. Thu May 02 11:03:23 BST 2019 Collecting peptides to map. Thu May 02 11:03:23 BST 2019 Mapping peptides to proteins. Thu May 02 11:03:23 BST 2019 Importing PSMs from 131104_NB14_01.ms-amanda.csv Thu May 02 11:03:24 BST 2019 Parsing 131104_NB14_01.msgf.mzid. Thu May 02 11:03:25 BST 2019 Loading spectra for 131104_NB14_01.msgf.mzid. Thu May 02 11:03:25 BST 2019 Collecting peptides to map. Thu May 02 11:03:25 BST 2019 Mapping peptides to proteins. Thu May 02 11:03:25 BST 2019 Importing PSMs from 131104_NB14_01.msgf.mzid Thu May 02 11:03:26 BST 2019 Parsing 131104_NB15_01.ms-amanda.csv. Thu May 02 11:03:26 BST 2019 Loading spectra for 131104_NB15_01.ms-amanda.csv. Thu May 02 11:03:26 BST 2019 Importing 131104_NB15_01.mgf Thu May 02 11:03:26 BST 2019 131104_NB15_01.mgf imported. Thu May 02 11:03:26 BST 2019 Collecting peptides to map. Thu May 02 11:03:27 BST 2019 Mapping peptides to proteins. Thu May 02 11:03:27 BST 2019 Importing PSMs from 131104_NB15_01.ms-amanda.csv Thu May 02 11:03:28 BST 2019 1 identified spectra (0.0%) did not present a valid peptide. Thu May 02 11:03:28 BST 2019 3174 of the best scoring peptides were excluded by the import filters: Thu May 02 11:03:28 BST 2019 - 99.9% peptide length less than 8 or greater than 30. Thu May 02 11:03:28 BST 2019 Parsing 131104_NB15_01.msgf.mzid. Thu May 02 11:03:29 BST 2019 Loading spectra for 131104_NB15_01.msgf.mzid. Thu May 02 11:03:29 BST 2019 Collecting peptides to map. Thu May 02 11:03:29 BST 2019 Mapping peptides to proteins. Thu May 02 11:03:29 BST 2019 Importing PSMs from 131104_NB15_01.msgf.mzid Thu May 02 11:03:30 BST 2019 Parsing 131104_NB16_01.ms-amanda.csv. Thu May 02 11:03:30 BST 2019 Loading spectra for 131104_NB16_01.ms-amanda.csv. Thu May 02 11:03:30 BST 2019 Importing 131104_NB16_01.mgf Thu May 02 11:03:30 BST 2019 131104_NB16_01.mgf imported. Thu May 02 11:03:31 BST 2019 Collecting peptides to map. Thu May 02 11:03:31 BST 2019 Mapping peptides to proteins. Thu May 02 11:03:31 BST 2019 Importing PSMs from 131104_NB16_01.ms-amanda.csv Thu May 02 11:03:32 BST 2019 1 identified spectra (0.0%) did not present a valid peptide. Thu May 02 11:03:32 BST 2019 3109 of the best scoring peptides were excluded by the import filters: Thu May 02 11:03:32 BST 2019 - 99.7% peptide length less than 8 or greater than 30. Thu May 02 11:03:32 BST 2019 Parsing 131104_NB16_01.msgf.mzid. Thu May 02 11:03:33 BST 2019 Loading spectra for 131104_NB16_01.msgf.mzid. Thu May 02 11:03:33 BST 2019 Collecting peptides to map. Thu May 02 11:03:33 BST 2019 Mapping peptides to proteins. Thu May 02 11:03:33 BST 2019 Importing PSMs from 131104_NB16_01.msgf.mzid Thu May 02 11:03:35 BST 2019 Parsing 131104_NB17_01.ms-amanda.csv. Thu May 02 11:03:35 BST 2019 Loading spectra for 131104_NB17_01.ms-amanda.csv. Thu May 02 11:03:35 BST 2019 Importing 131104_NB17_01.mgf Thu May 02 11:03:35 BST 2019 131104_NB17_01.mgf imported. Thu May 02 11:03:35 BST 2019 Collecting peptides to map. Thu May 02 11:03:35 BST 2019 Mapping peptides to proteins. Thu May 02 11:03:35 BST 2019 Importing PSMs from 131104_NB17_01.ms-amanda.csv Thu May 02 11:03:36 BST 2019 2 identified spectra (0.0%) did not present a valid peptide. Thu May 02 11:03:36 BST 2019 2834 of the best scoring peptides were excluded by the import filters: Thu May 02 11:03:36 BST 2019 - 99.5% peptide length less than 8 or greater than 30. Thu May 02 11:03:36 BST 2019 Parsing 131104_NB17_01.msgf.mzid. Thu May 02 11:03:37 BST 2019 Loading spectra for 131104_NB17_01.msgf.mzid. Thu May 02 11:03:37 BST 2019 Collecting peptides to map. Thu May 02 11:03:38 BST 2019 Mapping peptides to proteins. Thu May 02 11:03:38 BST 2019 Importing PSMs from 131104_NB17_01.msgf.mzid Thu May 02 11:03:39 BST 2019 Parsing 131104_NB18_01.ms-amanda.csv. Thu May 02 11:03:39 BST 2019 Loading spectra for 131104_NB18_01.ms-amanda.csv. Thu May 02 11:03:39 BST 2019 Importing 131104_NB18_01.mgf Thu May 02 11:03:39 BST 2019 131104_NB18_01.mgf imported. Thu May 02 11:03:39 BST 2019 Collecting peptides to map. Thu May 02 11:03:39 BST 2019 Mapping peptides to proteins. Thu May 02 11:03:39 BST 2019 Importing PSMs from 131104_NB18_01.ms-amanda.csv Thu May 02 11:03:40 BST 2019 1 identified spectra (0.0%) did not present a valid peptide. Thu May 02 11:03:40 BST 2019 3189 of the best scoring peptides were excluded by the import filters: Thu May 02 11:03:40 BST 2019 - 99.7% peptide length less than 8 or greater than 30. Thu May 02 11:03:40 BST 2019 Parsing 131104_NB18_01.msgf.mzid. Thu May 02 11:03:42 BST 2019 Loading spectra for 131104_NB18_01.msgf.mzid. Thu May 02 11:03:42 BST 2019 Collecting peptides to map. Thu May 02 11:03:42 BST 2019 Mapping peptides to proteins. Thu May 02 11:03:42 BST 2019 Importing PSMs from 131104_NB18_01.msgf.mzid Thu May 02 11:03:43 BST 2019 Parsing 131104_NB19_01.ms-amanda.csv. Thu May 02 11:03:43 BST 2019 Loading spectra for 131104_NB19_01.ms-amanda.csv. Thu May 02 11:03:43 BST 2019 Importing 131104_NB19_01.mgf Thu May 02 11:03:43 BST 2019 131104_NB19_01.mgf imported. Thu May 02 11:03:43 BST 2019 Collecting peptides to map. Thu May 02 11:03:43 BST 2019 Mapping peptides to proteins. Thu May 02 11:03:43 BST 2019 Importing PSMs from 131104_NB19_01.ms-amanda.csv Thu May 02 11:03:44 BST 2019 1 identified spectra (0.0%) did not present a valid peptide. Thu May 02 11:03:44 BST 2019 3340 of the best scoring peptides were excluded by the import filters: Thu May 02 11:03:44 BST 2019 - 99.7% peptide length less than 8 or greater than 30. Thu May 02 11:03:44 BST 2019 Parsing 131104_NB19_01.msgf.mzid. Thu May 02 11:03:46 BST 2019 Loading spectra for 131104_NB19_01.msgf.mzid. Thu May 02 11:03:46 BST 2019 Collecting peptides to map. Thu May 02 11:03:46 BST 2019 Mapping peptides to proteins. Thu May 02 11:03:46 BST 2019 Importing PSMs from 131104_NB19_01.msgf.mzid Thu May 02 11:03:47 BST 2019 Parsing 131104_NB1_01.ms-amanda.csv. Thu May 02 11:03:47 BST 2019 Loading spectra for 131104_NB1_01.ms-amanda.csv. Thu May 02 11:03:47 BST 2019 Importing 131104_NB1_01.mgf Thu May 02 11:03:48 BST 2019 131104_NB1_01.mgf imported. Thu May 02 11:03:48 BST 2019 Collecting peptides to map. Thu May 02 11:03:48 BST 2019 Mapping peptides to proteins. Thu May 02 11:03:48 BST 2019 Importing PSMs from 131104_NB1_01.ms-amanda.csv Thu May 02 11:03:49 BST 2019 Parsing 131104_NB1_01.msgf.mzid. Thu May 02 11:03:51 BST 2019 Loading spectra for 131104_NB1_01.msgf.mzid. Thu May 02 11:03:51 BST 2019 Collecting peptides to map. Thu May 02 11:03:51 BST 2019 Mapping peptides to proteins. Thu May 02 11:03:51 BST 2019 Importing PSMs from 131104_NB1_01.msgf.mzid Thu May 02 11:03:52 BST 2019 Parsing 131104_NB20_01.ms-amanda.csv. Thu May 02 11:03:52 BST 2019 Loading spectra for 131104_NB20_01.ms-amanda.csv. Thu May 02 11:03:52 BST 2019 Importing 131104_NB20_01.mgf Thu May 02 11:03:52 BST 2019 131104_NB20_01.mgf imported. Thu May 02 11:03:52 BST 2019 Collecting peptides to map. Thu May 02 11:03:52 BST 2019 Mapping peptides to proteins. Thu May 02 11:03:52 BST 2019 Importing PSMs from 131104_NB20_01.ms-amanda.csv Thu May 02 11:03:53 BST 2019 Parsing 131104_NB20_01.msgf.mzid. Thu May 02 11:03:54 BST 2019 Loading spectra for 131104_NB20_01.msgf.mzid. Thu May 02 11:03:54 BST 2019 Collecting peptides to map. Thu May 02 11:03:55 BST 2019 Mapping peptides to proteins. Thu May 02 11:03:55 BST 2019 Importing PSMs from 131104_NB20_01.msgf.mzid Thu May 02 11:03:56 BST 2019 Parsing 131104_NB21_01_131111144453.ms-amanda.csv. Thu May 02 11:03:56 BST 2019 Loading spectra for 131104_NB21_01_131111144453.ms-amanda.csv. Thu May 02 11:03:56 BST 2019 Importing 131104_NB21_01_131111144453.mgf Thu May 02 11:03:56 BST 2019 131104_NB21_01_131111144453.mgf imported. Thu May 02 11:03:56 BST 2019 Collecting peptides to map. Thu May 02 11:03:56 BST 2019 Mapping peptides to proteins. Thu May 02 11:03:56 BST 2019 Importing PSMs from 131104_NB21_01_131111144453.ms-amanda.csv Thu May 02 11:03:57 BST 2019 1 identified spectra (0.0%) did not present a valid peptide. Thu May 02 11:03:57 BST 2019 3677 of the best scoring peptides were excluded by the import filters: Thu May 02 11:03:57 BST 2019 - 99.7% peptide length less than 8 or greater than 30. Thu May 02 11:03:57 BST 2019 Parsing 131104_NB21_01_131111144453.msgf.mzid. Thu May 02 11:03:59 BST 2019 Loading spectra for 131104_NB21_01_131111144453.msgf.mzid. Thu May 02 11:03:59 BST 2019 Collecting peptides to map. Thu May 02 11:03:59 BST 2019 Mapping peptides to proteins. Thu May 02 11:03:59 BST 2019 Importing PSMs from 131104_NB21_01_131111144453.msgf.mzid Thu May 02 11:04:00 BST 2019 Parsing 131104_NB22_01.ms-amanda.csv. Thu May 02 11:04:00 BST 2019 Loading spectra for 131104_NB22_01.ms-amanda.csv. Thu May 02 11:04:00 BST 2019 Importing 131104_NB22_01.mgf Thu May 02 11:04:01 BST 2019 131104_NB22_01.mgf imported. Thu May 02 11:04:01 BST 2019 Collecting peptides to map. Thu May 02 11:04:01 BST 2019 Mapping peptides to proteins. Thu May 02 11:04:01 BST 2019 Importing PSMs from 131104_NB22_01.ms-amanda.csv Thu May 02 11:04:02 BST 2019 2 identified spectra (0.0%) did not present a valid peptide. Thu May 02 11:04:02 BST 2019 3382 of the best scoring peptides were excluded by the import filters: Thu May 02 11:04:02 BST 2019 - 99.8% peptide length less than 8 or greater than 30. Thu May 02 11:04:02 BST 2019 Parsing 131104_NB22_01.msgf.mzid. Thu May 02 11:04:03 BST 2019 Loading spectra for 131104_NB22_01.msgf.mzid. Thu May 02 11:04:03 BST 2019 Collecting peptides to map. Thu May 02 11:04:03 BST 2019 Mapping peptides to proteins. Thu May 02 11:04:03 BST 2019 Importing PSMs from 131104_NB22_01.msgf.mzid Thu May 02 11:04:04 BST 2019 1 identified spectra (0.0%) did not present a valid peptide. Thu May 02 11:04:04 BST 2019 25 of the best scoring peptides were excluded by the import filters: Thu May 02 11:04:04 BST 2019 - 88.0% peptide mapping to both target and decoy. Thu May 02 11:04:04 BST 2019 - 12.0% peptide presenting high mass or isotopic deviation. Thu May 02 11:04:04 BST 2019 Parsing 131104_NB23_01_131112013710.ms-amanda.csv. Thu May 02 11:04:05 BST 2019 Loading spectra for 131104_NB23_01_131112013710.ms-amanda.csv. Thu May 02 11:04:05 BST 2019 Importing 131104_NB23_01_131112013710.mgf Thu May 02 11:04:05 BST 2019 131104_NB23_01_131112013710.mgf imported. Thu May 02 11:04:05 BST 2019 Collecting peptides to map. Thu May 02 11:04:05 BST 2019 Mapping peptides to proteins. Thu May 02 11:04:05 BST 2019 Importing PSMs from 131104_NB23_01_131112013710.ms-amanda.csv Thu May 02 11:04:07 BST 2019 2 identified spectra (0.0%) did not present a valid peptide. Thu May 02 11:04:07 BST 2019 3637 of the best scoring peptides were excluded by the import filters: Thu May 02 11:04:07 BST 2019 - 99.8% peptide length less than 8 or greater than 30. Thu May 02 11:04:07 BST 2019 Parsing 131104_NB23_01_131112013710.msgf.mzid. Thu May 02 11:04:09 BST 2019 Loading spectra for 131104_NB23_01_131112013710.msgf.mzid. Thu May 02 11:04:09 BST 2019 Collecting peptides to map. Thu May 02 11:04:09 BST 2019 Mapping peptides to proteins. Thu May 02 11:04:09 BST 2019 Importing PSMs from 131104_NB23_01_131112013710.msgf.mzid Thu May 02 11:04:12 BST 2019 Parsing 131104_NB24_01.ms-amanda.csv. Thu May 02 11:04:12 BST 2019 Loading spectra for 131104_NB24_01.ms-amanda.csv. Thu May 02 11:04:12 BST 2019 Importing 131104_NB24_01.mgf Thu May 02 11:04:12 BST 2019 131104_NB24_01.mgf imported. Thu May 02 11:04:12 BST 2019 Collecting peptides to map. Thu May 02 11:04:12 BST 2019 Mapping peptides to proteins. Thu May 02 11:04:13 BST 2019 Importing PSMs from 131104_NB24_01.ms-amanda.csv Thu May 02 11:04:13 BST 2019 1 identified spectra (0.0%) did not present a valid peptide. Thu May 02 11:04:13 BST 2019 2147 of the best scoring peptides were excluded by the import filters: Thu May 02 11:04:13 BST 2019 - 99.6% peptide length less than 8 or greater than 30. Thu May 02 11:04:13 BST 2019 Parsing 131104_NB24_01.msgf.mzid. Thu May 02 11:04:15 BST 2019 Loading spectra for 131104_NB24_01.msgf.mzid. Thu May 02 11:04:15 BST 2019 Collecting peptides to map. Thu May 02 11:04:15 BST 2019 Mapping peptides to proteins. Thu May 02 11:04:15 BST 2019 Importing PSMs from 131104_NB24_01.msgf.mzid Thu May 02 11:04:16 BST 2019 Parsing 131104_NB25_01.ms-amanda.csv. Thu May 02 11:04:16 BST 2019 Loading spectra for 131104_NB25_01.ms-amanda.csv. Thu May 02 11:04:16 BST 2019 Importing 131104_NB25_01.mgf Thu May 02 11:04:16 BST 2019 131104_NB25_01.mgf imported. Thu May 02 11:04:16 BST 2019 Collecting peptides to map. Thu May 02 11:04:16 BST 2019 Mapping peptides to proteins. Thu May 02 11:04:16 BST 2019 Importing PSMs from 131104_NB25_01.ms-amanda.csv Thu May 02 11:04:17 BST 2019 1 identified spectra (0.0%) did not present a valid peptide. Thu May 02 11:04:17 BST 2019 3069 of the best scoring peptides were excluded by the import filters: Thu May 02 11:04:17 BST 2019 - 99.6% peptide length less than 8 or greater than 30. Thu May 02 11:04:17 BST 2019 Parsing 131104_NB25_01.msgf.mzid. Thu May 02 11:04:19 BST 2019 Loading spectra for 131104_NB25_01.msgf.mzid. Thu May 02 11:04:19 BST 2019 Collecting peptides to map. Thu May 02 11:04:19 BST 2019 Mapping peptides to proteins. Thu May 02 11:04:19 BST 2019 Importing PSMs from 131104_NB25_01.msgf.mzid Thu May 02 11:04:20 BST 2019 Parsing 131104_NB26_01.ms-amanda.csv. Thu May 02 11:04:20 BST 2019 Loading spectra for 131104_NB26_01.ms-amanda.csv. Thu May 02 11:04:20 BST 2019 Importing 131104_NB26_01.mgf Thu May 02 11:04:20 BST 2019 131104_NB26_01.mgf imported. Thu May 02 11:04:20 BST 2019 Collecting peptides to map. Thu May 02 11:04:20 BST 2019 Mapping peptides to proteins. Thu May 02 11:04:20 BST 2019 Importing PSMs from 131104_NB26_01.ms-amanda.csv Thu May 02 11:04:21 BST 2019 Parsing 131104_NB26_01.msgf.mzid. Thu May 02 11:04:23 BST 2019 Loading spectra for 131104_NB26_01.msgf.mzid. Thu May 02 11:04:23 BST 2019 Collecting peptides to map. Thu May 02 11:04:23 BST 2019 Mapping peptides to proteins. Thu May 02 11:04:23 BST 2019 Importing PSMs from 131104_NB26_01.msgf.mzid Thu May 02 11:04:24 BST 2019 Parsing 131104_NB27_01.ms-amanda.csv. Thu May 02 11:04:24 BST 2019 Loading spectra for 131104_NB27_01.ms-amanda.csv. Thu May 02 11:04:24 BST 2019 Importing 131104_NB27_01.mgf Thu May 02 11:04:25 BST 2019 131104_NB27_01.mgf imported. Thu May 02 11:04:25 BST 2019 Collecting peptides to map. Thu May 02 11:04:25 BST 2019 Mapping peptides to proteins. Thu May 02 11:04:25 BST 2019 Importing PSMs from 131104_NB27_01.ms-amanda.csv Thu May 02 11:04:26 BST 2019 Parsing 131104_NB27_01.msgf.mzid. Thu May 02 11:04:27 BST 2019 Loading spectra for 131104_NB27_01.msgf.mzid. Thu May 02 11:04:27 BST 2019 Collecting peptides to map. Thu May 02 11:04:27 BST 2019 Mapping peptides to proteins. Thu May 02 11:04:27 BST 2019 Importing PSMs from 131104_NB27_01.msgf.mzid Thu May 02 11:04:29 BST 2019 Parsing 131104_NB29_01.ms-amanda.csv. Thu May 02 11:04:29 BST 2019 Loading spectra for 131104_NB29_01.ms-amanda.csv. Thu May 02 11:04:29 BST 2019 Importing 131104_NB29_01.mgf Thu May 02 11:04:29 BST 2019 131104_NB29_01.mgf imported. Thu May 02 11:04:29 BST 2019 Collecting peptides to map. Thu May 02 11:04:29 BST 2019 Mapping peptides to proteins. Thu May 02 11:04:29 BST 2019 Importing PSMs from 131104_NB29_01.ms-amanda.csv Thu May 02 11:04:30 BST 2019 5 identified spectra (0.1%) did not present a valid peptide. Thu May 02 11:04:30 BST 2019 3123 of the best scoring peptides were excluded by the import filters: Thu May 02 11:04:30 BST 2019 - 99.6% peptide length less than 8 or greater than 30. Thu May 02 11:04:30 BST 2019 Parsing 131104_NB29_01.msgf.mzid. Thu May 02 11:04:31 BST 2019 Loading spectra for 131104_NB29_01.msgf.mzid. Thu May 02 11:04:31 BST 2019 Collecting peptides to map. Thu May 02 11:04:32 BST 2019 Mapping peptides to proteins. Thu May 02 11:04:32 BST 2019 Importing PSMs from 131104_NB29_01.msgf.mzid Thu May 02 11:04:33 BST 2019 Parsing 131104_NB2_01.ms-amanda.csv. Thu May 02 11:04:33 BST 2019 Loading spectra for 131104_NB2_01.ms-amanda.csv. Thu May 02 11:04:33 BST 2019 Importing 131104_NB2_01.mgf Thu May 02 11:04:33 BST 2019 131104_NB2_01.mgf imported. Thu May 02 11:04:33 BST 2019 Collecting peptides to map. Thu May 02 11:04:33 BST 2019 Mapping peptides to proteins. Thu May 02 11:04:33 BST 2019 Importing PSMs from 131104_NB2_01.ms-amanda.csv Thu May 02 11:04:34 BST 2019 2 identified spectra (0.0%) did not present a valid peptide. Thu May 02 11:04:34 BST 2019 3181 of the best scoring peptides were excluded by the import filters: Thu May 02 11:04:34 BST 2019 - 99.6% peptide length less than 8 or greater than 30. Thu May 02 11:04:34 BST 2019 Parsing 131104_NB2_01.msgf.mzid. Thu May 02 11:04:36 BST 2019 Loading spectra for 131104_NB2_01.msgf.mzid. Thu May 02 11:04:36 BST 2019 Collecting peptides to map. Thu May 02 11:04:36 BST 2019 Mapping peptides to proteins. Thu May 02 11:04:36 BST 2019 Importing PSMs from 131104_NB2_01.msgf.mzid Thu May 02 11:04:37 BST 2019 Parsing 131104_NB30_01.ms-amanda.csv. Thu May 02 11:04:37 BST 2019 Loading spectra for 131104_NB30_01.ms-amanda.csv. Thu May 02 11:04:37 BST 2019 Importing 131104_NB30_01.mgf Thu May 02 11:04:37 BST 2019 131104_NB30_01.mgf imported. Thu May 02 11:04:37 BST 2019 Collecting peptides to map. Thu May 02 11:04:40 BST 2019 Mapping peptides to proteins. Thu May 02 11:04:40 BST 2019 Importing PSMs from 131104_NB30_01.ms-amanda.csv Thu May 02 11:04:41 BST 2019 1 identified spectra (0.0%) did not present a valid peptide. Thu May 02 11:04:41 BST 2019 2873 of the best scoring peptides were excluded by the import filters: Thu May 02 11:04:41 BST 2019 - 99.8% peptide length less than 8 or greater than 30. Thu May 02 11:04:41 BST 2019 Parsing 131104_NB30_01.msgf.mzid. Thu May 02 11:04:42 BST 2019 Loading spectra for 131104_NB30_01.msgf.mzid. Thu May 02 11:04:42 BST 2019 Collecting peptides to map. Thu May 02 11:04:42 BST 2019 Mapping peptides to proteins. Thu May 02 11:04:42 BST 2019 Importing PSMs from 131104_NB30_01.msgf.mzid Thu May 02 11:04:43 BST 2019 Parsing 131104_NB31_01.ms-amanda.csv. Thu May 02 11:04:43 BST 2019 Loading spectra for 131104_NB31_01.ms-amanda.csv. Thu May 02 11:04:43 BST 2019 Importing 131104_NB31_01.mgf Thu May 02 11:04:44 BST 2019 131104_NB31_01.mgf imported. Thu May 02 11:04:44 BST 2019 Collecting peptides to map. Thu May 02 11:04:44 BST 2019 Mapping peptides to proteins. Thu May 02 11:04:44 BST 2019 Importing PSMs from 131104_NB31_01.ms-amanda.csv Thu May 02 11:04:45 BST 2019 Parsing 131104_NB31_01.msgf.mzid. Thu May 02 11:04:46 BST 2019 Loading spectra for 131104_NB31_01.msgf.mzid. Thu May 02 11:04:46 BST 2019 Collecting peptides to map. Thu May 02 11:04:46 BST 2019 Mapping peptides to proteins. Thu May 02 11:04:46 BST 2019 Importing PSMs from 131104_NB31_01.msgf.mzid Thu May 02 11:04:47 BST 2019 Parsing 131104_NB32_01.ms-amanda.csv. Thu May 02 11:04:47 BST 2019 Loading spectra for 131104_NB32_01.ms-amanda.csv. Thu May 02 11:04:47 BST 2019 Importing 131104_NB32_01.mgf Thu May 02 11:04:47 BST 2019 131104_NB32_01.mgf imported. Thu May 02 11:04:47 BST 2019 Collecting peptides to map. Thu May 02 11:04:48 BST 2019 Mapping peptides to proteins. Thu May 02 11:04:48 BST 2019 Importing PSMs from 131104_NB32_01.ms-amanda.csv Thu May 02 11:04:48 BST 2019 Parsing 131104_NB32_01.msgf.mzid. Thu May 02 11:04:50 BST 2019 Loading spectra for 131104_NB32_01.msgf.mzid. Thu May 02 11:04:50 BST 2019 Collecting peptides to map. Thu May 02 11:04:50 BST 2019 Mapping peptides to proteins. Thu May 02 11:04:50 BST 2019 Importing PSMs from 131104_NB32_01.msgf.mzid Thu May 02 11:04:51 BST 2019 Parsing 131104_NB33_01.ms-amanda.csv. Thu May 02 11:04:51 BST 2019 Loading spectra for 131104_NB33_01.ms-amanda.csv. Thu May 02 11:04:51 BST 2019 Importing 131104_NB33_01.mgf Thu May 02 11:04:51 BST 2019 131104_NB33_01.mgf imported. Thu May 02 11:04:51 BST 2019 Collecting peptides to map. Thu May 02 11:04:51 BST 2019 Mapping peptides to proteins. Thu May 02 11:04:51 BST 2019 Importing PSMs from 131104_NB33_01.ms-amanda.csv Thu May 02 11:04:52 BST 2019 1 identified spectra (0.0%) did not present a valid peptide. Thu May 02 11:04:52 BST 2019 2798 of the best scoring peptides were excluded by the import filters: Thu May 02 11:04:52 BST 2019 - 99.9% peptide length less than 8 or greater than 30. Thu May 02 11:04:52 BST 2019 Parsing 131104_NB33_01.msgf.mzid. Thu May 02 11:04:54 BST 2019 Loading spectra for 131104_NB33_01.msgf.mzid. Thu May 02 11:04:54 BST 2019 Collecting peptides to map. Thu May 02 11:04:54 BST 2019 Mapping peptides to proteins. Thu May 02 11:04:54 BST 2019 Importing PSMs from 131104_NB33_01.msgf.mzid Thu May 02 11:04:55 BST 2019 Parsing 131104_NB34_01.ms-amanda.csv. Thu May 02 11:04:55 BST 2019 Loading spectra for 131104_NB34_01.ms-amanda.csv. Thu May 02 11:04:55 BST 2019 Importing 131104_NB34_01.mgf Thu May 02 11:04:55 BST 2019 131104_NB34_01.mgf imported. Thu May 02 11:04:55 BST 2019 Collecting peptides to map. Thu May 02 11:04:55 BST 2019 Mapping peptides to proteins. Thu May 02 11:04:55 BST 2019 Importing PSMs from 131104_NB34_01.ms-amanda.csv Thu May 02 11:04:56 BST 2019 Parsing 131104_NB34_01.msgf.mzid. Thu May 02 11:04:58 BST 2019 Loading spectra for 131104_NB34_01.msgf.mzid. Thu May 02 11:04:58 BST 2019 Collecting peptides to map. Thu May 02 11:04:58 BST 2019 Mapping peptides to proteins. Thu May 02 11:04:58 BST 2019 Importing PSMs from 131104_NB34_01.msgf.mzid Thu May 02 11:05:00 BST 2019 Parsing 131104_NB35_01_131111122608.ms-amanda.csv. Thu May 02 11:05:00 BST 2019 Loading spectra for 131104_NB35_01_131111122608.ms-amanda.csv. Thu May 02 11:05:00 BST 2019 Importing 131104_NB35_01_131111122608.mgf Thu May 02 11:05:00 BST 2019 131104_NB35_01_131111122608.mgf imported. Thu May 02 11:05:00 BST 2019 Collecting peptides to map. Thu May 02 11:05:00 BST 2019 Mapping peptides to proteins. Thu May 02 11:05:00 BST 2019 Importing PSMs from 131104_NB35_01_131111122608.ms-amanda.csv Thu May 02 11:05:01 BST 2019 1 identified spectra (0.0%) did not present a valid peptide. Thu May 02 11:05:01 BST 2019 3517 of the best scoring peptides were excluded by the import filters: Thu May 02 11:05:01 BST 2019 - 99.6% peptide length less than 8 or greater than 30. Thu May 02 11:05:01 BST 2019 Parsing 131104_NB35_01_131111122608.msgf.mzid. Thu May 02 11:05:03 BST 2019 Loading spectra for 131104_NB35_01_131111122608.msgf.mzid. Thu May 02 11:05:03 BST 2019 Collecting peptides to map. Thu May 02 11:05:03 BST 2019 Mapping peptides to proteins. Thu May 02 11:05:03 BST 2019 Importing PSMs from 131104_NB35_01_131111122608.msgf.mzid Thu May 02 11:05:04 BST 2019 Parsing 131104_NB36_01_131111214105.ms-amanda.csv. Thu May 02 11:05:08 BST 2019 Loading spectra for 131104_NB36_01_131111214105.ms-amanda.csv. Thu May 02 11:05:08 BST 2019 Importing 131104_NB36_01_131111214105.mgf Thu May 02 11:05:08 BST 2019 131104_NB36_01_131111214105.mgf imported. Thu May 02 11:05:08 BST 2019 Collecting peptides to map. Thu May 02 11:05:08 BST 2019 Mapping peptides to proteins. Thu May 02 11:05:08 BST 2019 Importing PSMs from 131104_NB36_01_131111214105.ms-amanda.csv Thu May 02 11:05:09 BST 2019 2 identified spectra (0.0%) did not present a valid peptide. Thu May 02 11:05:09 BST 2019 3564 of the best scoring peptides were excluded by the import filters: Thu May 02 11:05:09 BST 2019 - 99.6% peptide length less than 8 or greater than 30. Thu May 02 11:05:09 BST 2019 Parsing 131104_NB36_01_131111214105.msgf.mzid. Thu May 02 11:05:11 BST 2019 Loading spectra for 131104_NB36_01_131111214105.msgf.mzid. Thu May 02 11:05:11 BST 2019 Collecting peptides to map. Thu May 02 11:05:11 BST 2019 Mapping peptides to proteins. Thu May 02 11:05:11 BST 2019 Importing PSMs from 131104_NB36_01_131111214105.msgf.mzid Thu May 02 11:05:12 BST 2019 Parsing 131104_NB37_01.ms-amanda.csv. Thu May 02 11:05:12 BST 2019 Loading spectra for 131104_NB37_01.ms-amanda.csv. Thu May 02 11:05:12 BST 2019 Importing 131104_NB37_01.mgf Thu May 02 11:05:12 BST 2019 131104_NB37_01.mgf imported. Thu May 02 11:05:12 BST 2019 Collecting peptides to map. Thu May 02 11:05:12 BST 2019 Mapping peptides to proteins. Thu May 02 11:05:13 BST 2019 Importing PSMs from 131104_NB37_01.ms-amanda.csv Thu May 02 11:05:14 BST 2019 Parsing 131104_NB37_01.msgf.mzid. Thu May 02 11:05:15 BST 2019 Loading spectra for 131104_NB37_01.msgf.mzid. Thu May 02 11:05:15 BST 2019 Collecting peptides to map. Thu May 02 11:05:15 BST 2019 Mapping peptides to proteins. Thu May 02 11:05:15 BST 2019 Importing PSMs from 131104_NB37_01.msgf.mzid Thu May 02 11:05:16 BST 2019 Parsing 131104_NB38_01.ms-amanda.csv. Thu May 02 11:05:16 BST 2019 Loading spectra for 131104_NB38_01.ms-amanda.csv. Thu May 02 11:05:16 BST 2019 Importing 131104_NB38_01.mgf Thu May 02 11:05:16 BST 2019 131104_NB38_01.mgf imported. Thu May 02 11:05:16 BST 2019 Collecting peptides to map. Thu May 02 11:05:16 BST 2019 Mapping peptides to proteins. Thu May 02 11:05:17 BST 2019 Importing PSMs from 131104_NB38_01.ms-amanda.csv Thu May 02 11:05:18 BST 2019 3 identified spectra (0.1%) did not present a valid peptide. Thu May 02 11:05:18 BST 2019 2967 of the best scoring peptides were excluded by the import filters: Thu May 02 11:05:18 BST 2019 - 99.6% peptide length less than 8 or greater than 30. Thu May 02 11:05:18 BST 2019 Parsing 131104_NB38_01.msgf.mzid. Thu May 02 11:05:19 BST 2019 Loading spectra for 131104_NB38_01.msgf.mzid. Thu May 02 11:05:19 BST 2019 Collecting peptides to map. Thu May 02 11:05:19 BST 2019 Mapping peptides to proteins. Thu May 02 11:05:19 BST 2019 Importing PSMs from 131104_NB38_01.msgf.mzid Thu May 02 11:05:20 BST 2019 Parsing 131104_NB39_01.ms-amanda.csv. Thu May 02 11:05:20 BST 2019 Loading spectra for 131104_NB39_01.ms-amanda.csv. Thu May 02 11:05:20 BST 2019 Importing 131104_NB39_01.mgf Thu May 02 11:05:21 BST 2019 131104_NB39_01.mgf imported. Thu May 02 11:05:21 BST 2019 Collecting peptides to map. Thu May 02 11:05:21 BST 2019 Mapping peptides to proteins. Thu May 02 11:05:21 BST 2019 Importing PSMs from 131104_NB39_01.ms-amanda.csv Thu May 02 11:05:22 BST 2019 1 identified spectra (0.0%) did not present a valid peptide. Thu May 02 11:05:22 BST 2019 3321 of the best scoring peptides were excluded by the import filters: Thu May 02 11:05:22 BST 2019 - 99.9% peptide length less than 8 or greater than 30. Thu May 02 11:05:22 BST 2019 Parsing 131104_NB39_01.msgf.mzid. Thu May 02 11:05:23 BST 2019 Loading spectra for 131104_NB39_01.msgf.mzid. Thu May 02 11:05:23 BST 2019 Collecting peptides to map. Thu May 02 11:05:23 BST 2019 Mapping peptides to proteins. Thu May 02 11:05:31 BST 2019 Importing PSMs from 131104_NB39_01.msgf.mzid Thu May 02 11:05:32 BST 2019 Parsing 131104_NB3_01.ms-amanda.csv. Thu May 02 11:05:32 BST 2019 Loading spectra for 131104_NB3_01.ms-amanda.csv. Thu May 02 11:05:32 BST 2019 Importing 131104_NB3_01.mgf Thu May 02 11:05:32 BST 2019 131104_NB3_01.mgf imported. Thu May 02 11:05:32 BST 2019 Collecting peptides to map. Thu May 02 11:05:32 BST 2019 Mapping peptides to proteins. Thu May 02 11:05:36 BST 2019 Importing PSMs from 131104_NB3_01.ms-amanda.csv Thu May 02 11:05:37 BST 2019 1 identified spectra (0.0%) did not present a valid peptide. Thu May 02 11:05:37 BST 2019 3640 of the best scoring peptides were excluded by the import filters: Thu May 02 11:05:37 BST 2019 - 99.6% peptide length less than 8 or greater than 30. Thu May 02 11:05:37 BST 2019 Parsing 131104_NB3_01.msgf.mzid. Thu May 02 11:05:41 BST 2019 Loading spectra for 131104_NB3_01.msgf.mzid. Thu May 02 11:05:41 BST 2019 Collecting peptides to map. Thu May 02 11:05:41 BST 2019 Mapping peptides to proteins. Thu May 02 11:05:41 BST 2019 Importing PSMs from 131104_NB3_01.msgf.mzid Thu May 02 11:05:42 BST 2019 Parsing 131104_NB40_01.ms-amanda.csv. Thu May 02 11:05:42 BST 2019 Loading spectra for 131104_NB40_01.ms-amanda.csv. Thu May 02 11:05:42 BST 2019 Importing 131104_NB40_01.mgf Thu May 02 11:05:42 BST 2019 131104_NB40_01.mgf imported. Thu May 02 11:05:42 BST 2019 Collecting peptides to map. Thu May 02 11:05:42 BST 2019 Mapping peptides to proteins. Thu May 02 11:05:42 BST 2019 Importing PSMs from 131104_NB40_01.ms-amanda.csv Thu May 02 11:05:43 BST 2019 Parsing 131104_NB40_01.msgf.mzid. Thu May 02 11:05:44 BST 2019 Loading spectra for 131104_NB40_01.msgf.mzid. Thu May 02 11:05:44 BST 2019 Collecting peptides to map. Thu May 02 11:05:45 BST 2019 Mapping peptides to proteins. Thu May 02 11:05:48 BST 2019 Importing PSMs from 131104_NB40_01.msgf.mzid Thu May 02 11:05:48 BST 2019 Parsing 131104_NB41_01.ms-amanda.csv. Thu May 02 11:05:49 BST 2019 Loading spectra for 131104_NB41_01.ms-amanda.csv. Thu May 02 11:05:49 BST 2019 Importing 131104_NB41_01.mgf Thu May 02 11:05:49 BST 2019 131104_NB41_01.mgf imported. Thu May 02 11:05:49 BST 2019 Collecting peptides to map. Thu May 02 11:05:49 BST 2019 Mapping peptides to proteins. Thu May 02 11:05:49 BST 2019 Importing PSMs from 131104_NB41_01.ms-amanda.csv Thu May 02 11:05:50 BST 2019 Parsing 131104_NB41_01.msgf.mzid. Thu May 02 11:05:52 BST 2019 Loading spectra for 131104_NB41_01.msgf.mzid. Thu May 02 11:05:52 BST 2019 Collecting peptides to map. Thu May 02 11:05:52 BST 2019 Mapping peptides to proteins. Thu May 02 11:05:56 BST 2019 Importing PSMs from 131104_NB41_01.msgf.mzid Thu May 02 11:05:57 BST 2019 Parsing 131104_NB42_01.ms-amanda.csv. Thu May 02 11:05:57 BST 2019 Loading spectra for 131104_NB42_01.ms-amanda.csv. Thu May 02 11:05:57 BST 2019 Importing 131104_NB42_01.mgf Thu May 02 11:05:57 BST 2019 131104_NB42_01.mgf imported. Thu May 02 11:05:57 BST 2019 Collecting peptides to map. Thu May 02 11:05:57 BST 2019 Mapping peptides to proteins. Thu May 02 11:05:57 BST 2019 Importing PSMs from 131104_NB42_01.ms-amanda.csv Thu May 02 11:05:58 BST 2019 1 identified spectra (0.0%) did not present a valid peptide. Thu May 02 11:05:58 BST 2019 3261 of the best scoring peptides were excluded by the import filters: Thu May 02 11:05:58 BST 2019 - 99.6% peptide length less than 8 or greater than 30. Thu May 02 11:05:58 BST 2019 Parsing 131104_NB42_01.msgf.mzid. Thu May 02 11:05:59 BST 2019 Loading spectra for 131104_NB42_01.msgf.mzid. Thu May 02 11:05:59 BST 2019 Collecting peptides to map. Thu May 02 11:05:59 BST 2019 Mapping peptides to proteins. Thu May 02 11:06:03 BST 2019 Importing PSMs from 131104_NB42_01.msgf.mzid Thu May 02 11:28:13 BST 2019 Parsing 131104_NB43_01.ms-amanda.csv. Thu May 02 11:28:14 BST 2019 Loading spectra for 131104_NB43_01.ms-amanda.csv. Thu May 02 11:28:14 BST 2019 Importing 131104_NB43_01.mgf Thu May 02 11:28:14 BST 2019 131104_NB43_01.mgf imported. Thu May 02 11:28:14 BST 2019 Collecting peptides to map. Thu May 02 11:28:14 BST 2019 Mapping peptides to proteins. Thu May 02 11:28:14 BST 2019 Importing PSMs from 131104_NB43_01.ms-amanda.csv Thu May 02 11:28:15 BST 2019 Parsing 131104_NB43_01.msgf.mzid. Thu May 02 11:28:16 BST 2019 Loading spectra for 131104_NB43_01.msgf.mzid. Thu May 02 11:28:16 BST 2019 Collecting peptides to map. Thu May 02 11:28:16 BST 2019 Mapping peptides to proteins. Thu May 02 11:28:16 BST 2019 Importing PSMs from 131104_NB43_01.msgf.mzid Thu May 02 11:28:18 BST 2019 Parsing 131104_NB44_01.ms-amanda.csv. Thu May 02 11:28:18 BST 2019 Loading spectra for 131104_NB44_01.ms-amanda.csv. Thu May 02 11:28:18 BST 2019 Importing 131104_NB44_01.mgf Thu May 02 11:28:18 BST 2019 131104_NB44_01.mgf imported. Thu May 02 11:28:18 BST 2019 Collecting peptides to map. Thu May 02 11:28:18 BST 2019 Mapping peptides to proteins. Thu May 02 11:28:18 BST 2019 Importing PSMs from 131104_NB44_01.ms-amanda.csv Thu May 02 11:28:19 BST 2019 1 identified spectra (0.0%) did not present a valid peptide. Thu May 02 11:28:19 BST 2019 3345 of the best scoring peptides were excluded by the import filters: Thu May 02 11:28:19 BST 2019 - 99.8% peptide length less than 8 or greater than 30. Thu May 02 11:28:19 BST 2019 Parsing 131104_NB44_01.msgf.mzid. Thu May 02 11:28:20 BST 2019 Loading spectra for 131104_NB44_01.msgf.mzid. Thu May 02 11:28:20 BST 2019 Collecting peptides to map. Thu May 02 11:28:21 BST 2019 Mapping peptides to proteins. Thu May 02 11:28:21 BST 2019 Importing PSMs from 131104_NB44_01.msgf.mzid Thu May 02 11:28:22 BST 2019 Parsing 131104_NB45_01.ms-amanda.csv. Thu May 02 11:28:22 BST 2019 Loading spectra for 131104_NB45_01.ms-amanda.csv. Thu May 02 11:28:22 BST 2019 Importing 131104_NB45_01.mgf Thu May 02 11:28:22 BST 2019 131104_NB45_01.mgf imported. Thu May 02 11:28:22 BST 2019 Collecting peptides to map. Thu May 02 11:28:22 BST 2019 Mapping peptides to proteins. Thu May 02 11:28:22 BST 2019 Importing PSMs from 131104_NB45_01.ms-amanda.csv Thu May 02 11:28:24 BST 2019 1 identified spectra (0.0%) did not present a valid peptide. Thu May 02 11:28:24 BST 2019 3400 of the best scoring peptides were excluded by the import filters: Thu May 02 11:28:24 BST 2019 - 99.8% peptide length less than 8 or greater than 30. Thu May 02 11:28:24 BST 2019 Parsing 131104_NB45_01.msgf.mzid. Thu May 02 11:28:25 BST 2019 Loading spectra for 131104_NB45_01.msgf.mzid. Thu May 02 11:28:25 BST 2019 Collecting peptides to map. Thu May 02 11:28:25 BST 2019 Mapping peptides to proteins. Thu May 02 11:28:25 BST 2019 Importing PSMs from 131104_NB45_01.msgf.mzid Thu May 02 11:28:26 BST 2019 Parsing 131104_NB46_01.ms-amanda.csv. Thu May 02 11:28:27 BST 2019 Loading spectra for 131104_NB46_01.ms-amanda.csv. Thu May 02 11:28:27 BST 2019 Importing 131104_NB46_01.mgf Thu May 02 11:28:27 BST 2019 131104_NB46_01.mgf imported. Thu May 02 11:28:27 BST 2019 Collecting peptides to map. Thu May 02 11:28:27 BST 2019 Mapping peptides to proteins. Thu May 02 11:28:27 BST 2019 Importing PSMs from 131104_NB46_01.ms-amanda.csv Thu May 02 11:28:28 BST 2019 Parsing 131104_NB46_01.msgf.mzid. Thu May 02 11:28:29 BST 2019 Loading spectra for 131104_NB46_01.msgf.mzid. Thu May 02 11:28:29 BST 2019 Collecting peptides to map. Thu May 02 11:28:29 BST 2019 Mapping peptides to proteins. Thu May 02 11:28:29 BST 2019 Importing PSMs from 131104_NB46_01.msgf.mzid Thu May 02 11:28:30 BST 2019 Parsing 131104_NB47_01.ms-amanda.csv. Thu May 02 11:28:31 BST 2019 Loading spectra for 131104_NB47_01.ms-amanda.csv. Thu May 02 11:28:31 BST 2019 Importing 131104_NB47_01.mgf Thu May 02 11:28:31 BST 2019 131104_NB47_01.mgf imported. Thu May 02 11:28:31 BST 2019 Collecting peptides to map. Thu May 02 11:28:31 BST 2019 Mapping peptides to proteins. Thu May 02 11:28:31 BST 2019 Importing PSMs from 131104_NB47_01.ms-amanda.csv Thu May 02 11:28:32 BST 2019 Parsing 131104_NB47_01.msgf.mzid. Thu May 02 11:28:34 BST 2019 Loading spectra for 131104_NB47_01.msgf.mzid. Thu May 02 11:28:34 BST 2019 Collecting peptides to map. Thu May 02 11:28:34 BST 2019 Mapping peptides to proteins. Thu May 02 11:28:34 BST 2019 Importing PSMs from 131104_NB47_01.msgf.mzid Thu May 02 11:28:35 BST 2019 Parsing 131104_NB48_01.ms-amanda.csv. Thu May 02 11:28:35 BST 2019 Loading spectra for 131104_NB48_01.ms-amanda.csv. Thu May 02 11:28:35 BST 2019 Importing 131104_NB48_01.mgf Thu May 02 11:28:35 BST 2019 131104_NB48_01.mgf imported. Thu May 02 11:28:35 BST 2019 Collecting peptides to map. Thu May 02 11:28:35 BST 2019 Mapping peptides to proteins. Thu May 02 11:28:35 BST 2019 Importing PSMs from 131104_NB48_01.ms-amanda.csv Thu May 02 11:28:36 BST 2019 Parsing 131104_NB48_01.msgf.mzid. Thu May 02 11:28:38 BST 2019 Loading spectra for 131104_NB48_01.msgf.mzid. Thu May 02 11:28:38 BST 2019 Collecting peptides to map. Thu May 02 11:28:38 BST 2019 Mapping peptides to proteins. Thu May 02 11:28:38 BST 2019 Importing PSMs from 131104_NB48_01.msgf.mzid Thu May 02 11:28:39 BST 2019 Parsing 131104_NB49_01.ms-amanda.csv. Thu May 02 11:28:39 BST 2019 Loading spectra for 131104_NB49_01.ms-amanda.csv. Thu May 02 11:28:39 BST 2019 Importing 131104_NB49_01.mgf Thu May 02 11:28:39 BST 2019 131104_NB49_01.mgf imported. Thu May 02 11:28:40 BST 2019 Collecting peptides to map. Thu May 02 11:28:40 BST 2019 Mapping peptides to proteins. Thu May 02 11:28:40 BST 2019 Importing PSMs from 131104_NB49_01.ms-amanda.csv Thu May 02 11:28:41 BST 2019 1 identified spectra (0.0%) did not present a valid peptide. Thu May 02 11:28:41 BST 2019 3425 of the best scoring peptides were excluded by the import filters: Thu May 02 11:28:41 BST 2019 - 99.8% peptide length less than 8 or greater than 30. Thu May 02 11:28:41 BST 2019 Parsing 131104_NB49_01.msgf.mzid. Thu May 02 11:28:42 BST 2019 Loading spectra for 131104_NB49_01.msgf.mzid. Thu May 02 11:28:42 BST 2019 Collecting peptides to map. Thu May 02 11:28:43 BST 2019 Mapping peptides to proteins. Thu May 02 11:28:43 BST 2019 Importing PSMs from 131104_NB49_01.msgf.mzid Thu May 02 11:28:44 BST 2019 Parsing 131104_NB4_01.ms-amanda.csv. Thu May 02 11:28:44 BST 2019 Loading spectra for 131104_NB4_01.ms-amanda.csv. Thu May 02 11:28:44 BST 2019 Importing 131104_NB4_01.mgf Thu May 02 11:28:44 BST 2019 131104_NB4_01.mgf imported. Thu May 02 11:28:44 BST 2019 Collecting peptides to map. Thu May 02 11:28:44 BST 2019 Mapping peptides to proteins. Thu May 02 11:28:44 BST 2019 Importing PSMs from 131104_NB4_01.ms-amanda.csv Thu May 02 11:28:45 BST 2019 1 identified spectra (0.0%) did not present a valid peptide. Thu May 02 11:28:45 BST 2019 3387 of the best scoring peptides were excluded by the import filters: Thu May 02 11:28:45 BST 2019 - 99.7% peptide length less than 8 or greater than 30. Thu May 02 11:28:45 BST 2019 Parsing 131104_NB4_01.msgf.mzid. Thu May 02 11:28:46 BST 2019 Loading spectra for 131104_NB4_01.msgf.mzid. Thu May 02 11:28:46 BST 2019 Collecting peptides to map. Thu May 02 11:28:47 BST 2019 Mapping peptides to proteins. Thu May 02 11:28:47 BST 2019 Importing PSMs from 131104_NB4_01.msgf.mzid Thu May 02 11:28:48 BST 2019 Parsing 131104_NB50_01.ms-amanda.csv. Thu May 02 11:28:48 BST 2019 Loading spectra for 131104_NB50_01.ms-amanda.csv. Thu May 02 11:28:48 BST 2019 Importing 131104_NB50_01.mgf Thu May 02 11:28:48 BST 2019 131104_NB50_01.mgf imported. Thu May 02 11:28:48 BST 2019 Collecting peptides to map. Thu May 02 11:28:48 BST 2019 Mapping peptides to proteins. Thu May 02 11:28:48 BST 2019 Importing PSMs from 131104_NB50_01.ms-amanda.csv Thu May 02 11:28:49 BST 2019 1 identified spectra (0.0%) did not present a valid peptide. Thu May 02 11:28:49 BST 2019 3228 of the best scoring peptides were excluded by the import filters: Thu May 02 11:28:49 BST 2019 - 99.8% peptide length less than 8 or greater than 30. Thu May 02 11:28:49 BST 2019 Parsing 131104_NB50_01.msgf.mzid. Thu May 02 11:28:50 BST 2019 Loading spectra for 131104_NB50_01.msgf.mzid. Thu May 02 11:28:50 BST 2019 Collecting peptides to map. Thu May 02 11:28:50 BST 2019 Mapping peptides to proteins. Thu May 02 11:28:50 BST 2019 Importing PSMs from 131104_NB50_01.msgf.mzid Thu May 02 11:28:51 BST 2019 Parsing 131104_NB51_01.ms-amanda.csv. Thu May 02 11:28:52 BST 2019 Loading spectra for 131104_NB51_01.ms-amanda.csv. Thu May 02 11:28:52 BST 2019 Importing 131104_NB51_01.mgf Thu May 02 11:28:52 BST 2019 131104_NB51_01.mgf imported. Thu May 02 11:28:52 BST 2019 Collecting peptides to map. Thu May 02 11:28:52 BST 2019 Mapping peptides to proteins. Thu May 02 11:28:52 BST 2019 Importing PSMs from 131104_NB51_01.ms-amanda.csv Thu May 02 11:28:53 BST 2019 3 identified spectra (0.1%) did not present a valid peptide. Thu May 02 11:28:53 BST 2019 3275 of the best scoring peptides were excluded by the import filters: Thu May 02 11:28:53 BST 2019 - 99.8% peptide length less than 8 or greater than 30. Thu May 02 11:28:53 BST 2019 Parsing 131104_NB51_01.msgf.mzid. Thu May 02 11:28:54 BST 2019 Loading spectra for 131104_NB51_01.msgf.mzid. Thu May 02 11:28:54 BST 2019 Collecting peptides to map. Thu May 02 11:28:54 BST 2019 Mapping peptides to proteins. Thu May 02 11:28:54 BST 2019 Importing PSMs from 131104_NB51_01.msgf.mzid Thu May 02 11:28:55 BST 2019 Parsing 131104_NB52_01.ms-amanda.csv. Thu May 02 11:28:56 BST 2019 Loading spectra for 131104_NB52_01.ms-amanda.csv. Thu May 02 11:28:56 BST 2019 Importing 131104_NB52_01.mgf Thu May 02 11:28:56 BST 2019 131104_NB52_01.mgf imported. Thu May 02 11:28:56 BST 2019 Collecting peptides to map. Thu May 02 11:28:56 BST 2019 Mapping peptides to proteins. Thu May 02 11:28:56 BST 2019 Importing PSMs from 131104_NB52_01.ms-amanda.csv Thu May 02 11:28:56 BST 2019 2 identified spectra (0.0%) did not present a valid peptide. Thu May 02 11:28:56 BST 2019 3218 of the best scoring peptides were excluded by the import filters: Thu May 02 11:28:56 BST 2019 - 99.5% peptide length less than 8 or greater than 30. Thu May 02 11:28:56 BST 2019 Parsing 131104_NB52_01.msgf.mzid. Thu May 02 11:28:58 BST 2019 Loading spectra for 131104_NB52_01.msgf.mzid. Thu May 02 11:28:58 BST 2019 Collecting peptides to map. Thu May 02 11:28:58 BST 2019 Mapping peptides to proteins. Thu May 02 11:28:58 BST 2019 Importing PSMs from 131104_NB52_01.msgf.mzid Thu May 02 11:28:59 BST 2019 Parsing 131104_NB53_01.ms-amanda.csv. Thu May 02 11:28:59 BST 2019 Loading spectra for 131104_NB53_01.ms-amanda.csv. Thu May 02 11:28:59 BST 2019 Importing 131104_NB53_01.mgf Thu May 02 11:28:59 BST 2019 131104_NB53_01.mgf imported. Thu May 02 11:28:59 BST 2019 Collecting peptides to map. Thu May 02 11:28:59 BST 2019 Mapping peptides to proteins. Thu May 02 11:28:59 BST 2019 Importing PSMs from 131104_NB53_01.ms-amanda.csv Thu May 02 11:29:00 BST 2019 Parsing 131104_NB53_01.msgf.mzid. Thu May 02 11:29:02 BST 2019 Loading spectra for 131104_NB53_01.msgf.mzid. Thu May 02 11:29:02 BST 2019 Collecting peptides to map. Thu May 02 11:29:02 BST 2019 Mapping peptides to proteins. Thu May 02 11:29:02 BST 2019 Importing PSMs from 131104_NB53_01.msgf.mzid Thu May 02 11:29:03 BST 2019 Parsing 131104_NB54_01_131111170336.ms-amanda.csv. Thu May 02 11:29:03 BST 2019 Loading spectra for 131104_NB54_01_131111170336.ms-amanda.csv. Thu May 02 11:29:03 BST 2019 Importing 131104_NB54_01_131111170336.mgf Thu May 02 11:29:03 BST 2019 131104_NB54_01_131111170336.mgf imported. Thu May 02 11:29:03 BST 2019 Collecting peptides to map. Thu May 02 11:29:03 BST 2019 Mapping peptides to proteins. Thu May 02 11:29:03 BST 2019 Importing PSMs from 131104_NB54_01_131111170336.ms-amanda.csv Thu May 02 11:29:04 BST 2019 2 identified spectra (0.0%) did not present a valid peptide. Thu May 02 11:29:04 BST 2019 3677 of the best scoring peptides were excluded by the import filters: Thu May 02 11:29:04 BST 2019 - 99.7% peptide length less than 8 or greater than 30. Thu May 02 11:29:04 BST 2019 Parsing 131104_NB54_01_131111170336.msgf.mzid. Thu May 02 11:29:06 BST 2019 Loading spectra for 131104_NB54_01_131111170336.msgf.mzid. Thu May 02 11:29:06 BST 2019 Collecting peptides to map. Thu May 02 11:29:06 BST 2019 Mapping peptides to proteins. Thu May 02 11:29:06 BST 2019 Importing PSMs from 131104_NB54_01_131111170336.msgf.mzid Thu May 02 11:29:08 BST 2019 Parsing 131104_NB55_01.ms-amanda.csv. Thu May 02 11:29:08 BST 2019 Loading spectra for 131104_NB55_01.ms-amanda.csv. Thu May 02 11:29:08 BST 2019 Importing 131104_NB55_01.mgf Thu May 02 11:29:08 BST 2019 131104_NB55_01.mgf imported. Thu May 02 11:29:08 BST 2019 Collecting peptides to map. Thu May 02 11:29:08 BST 2019 Mapping peptides to proteins. Thu May 02 11:29:08 BST 2019 Importing PSMs from 131104_NB55_01.ms-amanda.csv Thu May 02 11:29:09 BST 2019 2 identified spectra (0.0%) did not present a valid peptide. Thu May 02 11:29:09 BST 2019 2990 of the best scoring peptides were excluded by the import filters: Thu May 02 11:29:09 BST 2019 - 99.5% peptide length less than 8 or greater than 30. Thu May 02 11:29:09 BST 2019 Parsing 131104_NB55_01.msgf.mzid. Thu May 02 11:29:10 BST 2019 Loading spectra for 131104_NB55_01.msgf.mzid. Thu May 02 11:29:10 BST 2019 Collecting peptides to map. Thu May 02 11:29:11 BST 2019 Mapping peptides to proteins. Thu May 02 11:29:11 BST 2019 Importing PSMs from 131104_NB55_01.msgf.mzid Thu May 02 11:29:12 BST 2019 Parsing 131104_NB56_01.ms-amanda.csv. Thu May 02 11:29:12 BST 2019 Loading spectra for 131104_NB56_01.ms-amanda.csv. Thu May 02 11:29:12 BST 2019 Importing 131104_NB56_01.mgf Thu May 02 11:29:12 BST 2019 131104_NB56_01.mgf imported. Thu May 02 11:29:12 BST 2019 Collecting peptides to map. Thu May 02 11:29:12 BST 2019 Mapping peptides to proteins. Thu May 02 11:29:12 BST 2019 Importing PSMs from 131104_NB56_01.ms-amanda.csv Thu May 02 11:29:13 BST 2019 1 identified spectra (0.0%) did not present a valid peptide. Thu May 02 11:29:13 BST 2019 2947 of the best scoring peptides were excluded by the import filters: Thu May 02 11:29:13 BST 2019 - 99.7% peptide length less than 8 or greater than 30. Thu May 02 11:29:13 BST 2019 Parsing 131104_NB56_01.msgf.mzid. Thu May 02 11:29:15 BST 2019 Loading spectra for 131104_NB56_01.msgf.mzid. Thu May 02 11:29:15 BST 2019 Collecting peptides to map. Thu May 02 11:29:15 BST 2019 Mapping peptides to proteins. Thu May 02 11:29:15 BST 2019 Importing PSMs from 131104_NB56_01.msgf.mzid Thu May 02 11:29:16 BST 2019 Parsing 131104_NB57_01.ms-amanda.csv. Thu May 02 11:29:16 BST 2019 Loading spectra for 131104_NB57_01.ms-amanda.csv. Thu May 02 11:29:16 BST 2019 Importing 131104_NB57_01.mgf Thu May 02 11:29:16 BST 2019 131104_NB57_01.mgf imported. Thu May 02 11:29:16 BST 2019 Collecting peptides to map. Thu May 02 11:29:16 BST 2019 Mapping peptides to proteins. Thu May 02 11:29:16 BST 2019 Importing PSMs from 131104_NB57_01.ms-amanda.csv Thu May 02 11:29:17 BST 2019 1 identified spectra (0.0%) did not present a valid peptide. Thu May 02 11:29:17 BST 2019 3575 of the best scoring peptides were excluded by the import filters: Thu May 02 11:29:17 BST 2019 - 99.6% peptide length less than 8 or greater than 30. Thu May 02 11:29:17 BST 2019 Parsing 131104_NB57_01.msgf.mzid. Thu May 02 11:29:19 BST 2019 Loading spectra for 131104_NB57_01.msgf.mzid. Thu May 02 11:29:19 BST 2019 Collecting peptides to map. Thu May 02 11:29:19 BST 2019 Mapping peptides to proteins. Thu May 02 11:29:19 BST 2019 Importing PSMs from 131104_NB57_01.msgf.mzid Thu May 02 11:29:20 BST 2019 Parsing 131104_NB58_01.ms-amanda.csv. Thu May 02 11:29:20 BST 2019 Loading spectra for 131104_NB58_01.ms-amanda.csv. Thu May 02 11:29:20 BST 2019 Importing 131104_NB58_01.mgf Thu May 02 11:29:20 BST 2019 131104_NB58_01.mgf imported. Thu May 02 11:29:20 BST 2019 Collecting peptides to map. Thu May 02 11:29:20 BST 2019 Mapping peptides to proteins. Thu May 02 11:29:20 BST 2019 Importing PSMs from 131104_NB58_01.ms-amanda.csv Thu May 02 11:29:21 BST 2019 1 identified spectra (0.0%) did not present a valid peptide. Thu May 02 11:29:21 BST 2019 2981 of the best scoring peptides were excluded by the import filters: Thu May 02 11:29:21 BST 2019 - 99.8% peptide length less than 8 or greater than 30. Thu May 02 11:29:21 BST 2019 Parsing 131104_NB58_01.msgf.mzid. Thu May 02 11:29:23 BST 2019 Loading spectra for 131104_NB58_01.msgf.mzid. Thu May 02 11:29:23 BST 2019 Collecting peptides to map. Thu May 02 11:29:23 BST 2019 Mapping peptides to proteins. Thu May 02 11:29:23 BST 2019 Importing PSMs from 131104_NB58_01.msgf.mzid Thu May 02 11:29:24 BST 2019 Parsing 131104_NB59_01.ms-amanda.csv. Thu May 02 11:29:24 BST 2019 Loading spectra for 131104_NB59_01.ms-amanda.csv. Thu May 02 11:29:24 BST 2019 Importing 131104_NB59_01.mgf Thu May 02 11:29:24 BST 2019 131104_NB59_01.mgf imported. Thu May 02 11:29:24 BST 2019 Collecting peptides to map. Thu May 02 11:29:24 BST 2019 Mapping peptides to proteins. Thu May 02 11:29:24 BST 2019 Importing PSMs from 131104_NB59_01.ms-amanda.csv Thu May 02 11:29:25 BST 2019 2 identified spectra (0.0%) did not present a valid peptide. Thu May 02 11:29:25 BST 2019 3587 of the best scoring peptides were excluded by the import filters: Thu May 02 11:29:25 BST 2019 - 99.7% peptide length less than 8 or greater than 30. Thu May 02 11:29:25 BST 2019 Parsing 131104_NB59_01.msgf.mzid. Thu May 02 11:29:27 BST 2019 Loading spectra for 131104_NB59_01.msgf.mzid. Thu May 02 11:29:27 BST 2019 Collecting peptides to map. Thu May 02 11:29:27 BST 2019 Mapping peptides to proteins. Thu May 02 11:29:27 BST 2019 Importing PSMs from 131104_NB59_01.msgf.mzid Thu May 02 11:29:30 BST 2019 Parsing 131104_NB5_01.ms-amanda.csv. Thu May 02 11:29:30 BST 2019 Loading spectra for 131104_NB5_01.ms-amanda.csv. Thu May 02 11:29:30 BST 2019 Importing 131104_NB5_01.mgf Thu May 02 11:29:30 BST 2019 131104_NB5_01.mgf imported. Thu May 02 11:29:30 BST 2019 Collecting peptides to map. Thu May 02 11:29:30 BST 2019 Mapping peptides to proteins. Thu May 02 11:29:30 BST 2019 Importing PSMs from 131104_NB5_01.ms-amanda.csv Thu May 02 11:29:31 BST 2019 2 identified spectra (0.0%) did not present a valid peptide. Thu May 02 11:29:31 BST 2019 3235 of the best scoring peptides were excluded by the import filters: Thu May 02 11:29:31 BST 2019 - 99.6% peptide length less than 8 or greater than 30. Thu May 02 11:29:31 BST 2019 Parsing 131104_NB5_01.msgf.mzid. Thu May 02 11:29:32 BST 2019 Loading spectra for 131104_NB5_01.msgf.mzid. Thu May 02 11:29:32 BST 2019 Collecting peptides to map. Thu May 02 11:29:32 BST 2019 Mapping peptides to proteins. Thu May 02 11:29:32 BST 2019 Importing PSMs from 131104_NB5_01.msgf.mzid Thu May 02 11:29:34 BST 2019 Parsing 131104_NB60_01.ms-amanda.csv. Thu May 02 11:29:34 BST 2019 Loading spectra for 131104_NB60_01.ms-amanda.csv. Thu May 02 11:29:34 BST 2019 Importing 131104_NB60_01.mgf Thu May 02 11:29:34 BST 2019 131104_NB60_01.mgf imported. Thu May 02 11:29:34 BST 2019 Collecting peptides to map. Thu May 02 11:29:34 BST 2019 Mapping peptides to proteins. Thu May 02 11:29:34 BST 2019 Importing PSMs from 131104_NB60_01.ms-amanda.csv Thu May 02 11:34:05 BST 2019 1 identified spectra (0.0%) did not present a valid peptide. Thu May 02 11:34:05 BST 2019 3270 of the best scoring peptides were excluded by the import filters: Thu May 02 11:34:05 BST 2019 - 99.7% peptide length less than 8 or greater than 30. Thu May 02 11:34:05 BST 2019 Parsing 131104_NB60_01.msgf.mzid. Thu May 02 11:34:07 BST 2019 Loading spectra for 131104_NB60_01.msgf.mzid. Thu May 02 11:34:07 BST 2019 Collecting peptides to map. Thu May 02 11:34:07 BST 2019 Mapping peptides to proteins. Thu May 02 11:34:09 BST 2019 Importing PSMs from 131104_NB60_01.msgf.mzid Thu May 02 11:34:10 BST 2019 Parsing 131104_NB61_01.ms-amanda.csv. Thu May 02 11:34:11 BST 2019 Loading spectra for 131104_NB61_01.ms-amanda.csv. Thu May 02 11:34:11 BST 2019 Importing 131104_NB61_01.mgf Thu May 02 11:34:11 BST 2019 131104_NB61_01.mgf imported. Thu May 02 11:34:11 BST 2019 Collecting peptides to map. Thu May 02 11:34:11 BST 2019 Mapping peptides to proteins. Thu May 02 11:34:11 BST 2019 Importing PSMs from 131104_NB61_01.ms-amanda.csv Thu May 02 11:34:12 BST 2019 3 identified spectra (0.1%) did not present a valid peptide. Thu May 02 11:34:12 BST 2019 3677 of the best scoring peptides were excluded by the import filters: Thu May 02 11:34:12 BST 2019 - 99.7% peptide length less than 8 or greater than 30. Thu May 02 11:34:12 BST 2019 Parsing 131104_NB61_01.msgf.mzid. Thu May 02 11:34:13 BST 2019 Loading spectra for 131104_NB61_01.msgf.mzid. Thu May 02 11:34:13 BST 2019 Collecting peptides to map. Thu May 02 11:34:13 BST 2019 Mapping peptides to proteins. Thu May 02 11:34:13 BST 2019 Importing PSMs from 131104_NB61_01.msgf.mzid Thu May 02 11:34:14 BST 2019 Parsing 131104_NB62_01.ms-amanda.csv. Thu May 02 11:34:15 BST 2019 Loading spectra for 131104_NB62_01.ms-amanda.csv. Thu May 02 11:34:15 BST 2019 Importing 131104_NB62_01.mgf Thu May 02 11:34:15 BST 2019 131104_NB62_01.mgf imported. Thu May 02 11:34:15 BST 2019 Collecting peptides to map. Thu May 02 11:34:15 BST 2019 Mapping peptides to proteins. Thu May 02 11:34:15 BST 2019 Importing PSMs from 131104_NB62_01.ms-amanda.csv Thu May 02 11:34:16 BST 2019 2 identified spectra (0.0%) did not present a valid peptide. Thu May 02 11:34:16 BST 2019 3647 of the best scoring peptides were excluded by the import filters: Thu May 02 11:34:16 BST 2019 - 99.7% peptide length less than 8 or greater than 30. Thu May 02 11:34:16 BST 2019 Parsing 131104_NB62_01.msgf.mzid. Thu May 02 11:34:17 BST 2019 Loading spectra for 131104_NB62_01.msgf.mzid. Thu May 02 11:34:17 BST 2019 Collecting peptides to map. Thu May 02 11:34:18 BST 2019 Mapping peptides to proteins. Thu May 02 11:34:18 BST 2019 Importing PSMs from 131104_NB62_01.msgf.mzid Thu May 02 11:34:19 BST 2019 Parsing 131104_NB6_01.ms-amanda.csv. Thu May 02 11:34:19 BST 2019 Loading spectra for 131104_NB6_01.ms-amanda.csv. Thu May 02 11:34:19 BST 2019 Importing 131104_NB6_01.mgf Thu May 02 11:34:20 BST 2019 131104_NB6_01.mgf imported. Thu May 02 11:34:20 BST 2019 Collecting peptides to map. Thu May 02 11:34:20 BST 2019 Mapping peptides to proteins. Thu May 02 11:34:20 BST 2019 Importing PSMs from 131104_NB6_01.ms-amanda.csv Thu May 02 11:34:21 BST 2019 Parsing 131104_NB6_01.msgf.mzid. Thu May 02 11:34:22 BST 2019 Loading spectra for 131104_NB6_01.msgf.mzid. Thu May 02 11:34:22 BST 2019 Collecting peptides to map. Thu May 02 11:34:22 BST 2019 Mapping peptides to proteins. Thu May 02 11:34:22 BST 2019 Importing PSMs from 131104_NB6_01.msgf.mzid Thu May 02 11:34:23 BST 2019 Parsing 131104_NB7_01_131111192221.ms-amanda.csv. Thu May 02 11:34:23 BST 2019 Loading spectra for 131104_NB7_01_131111192221.ms-amanda.csv. Thu May 02 11:34:23 BST 2019 Importing 131104_NB7_01_131111192221.mgf Thu May 02 11:34:24 BST 2019 131104_NB7_01_131111192221.mgf imported. Thu May 02 11:34:24 BST 2019 Collecting peptides to map. Thu May 02 11:34:24 BST 2019 Mapping peptides to proteins. Thu May 02 11:34:24 BST 2019 Importing PSMs from 131104_NB7_01_131111192221.ms-amanda.csv Thu May 02 11:34:25 BST 2019 2 identified spectra (0.0%) did not present a valid peptide. Thu May 02 11:34:25 BST 2019 3638 of the best scoring peptides were excluded by the import filters: Thu May 02 11:34:25 BST 2019 - 99.6% peptide length less than 8 or greater than 30. Thu May 02 11:34:25 BST 2019 Parsing 131104_NB7_01_131111192221.msgf.mzid. Thu May 02 11:34:27 BST 2019 Loading spectra for 131104_NB7_01_131111192221.msgf.mzid. Thu May 02 11:34:27 BST 2019 Collecting peptides to map. Thu May 02 11:34:27 BST 2019 Mapping peptides to proteins. Thu May 02 11:34:27 BST 2019 Importing PSMs from 131104_NB7_01_131111192221.msgf.mzid Thu May 02 11:42:23 BST 2019 2 identified spectra (0.0%) did not present a valid peptide. Thu May 02 11:42:23 BST 2019 18 of the best scoring peptides were excluded by the import filters: Thu May 02 11:42:23 BST 2019 - 94.4% peptide mapping to both target and decoy. Thu May 02 11:42:23 BST 2019 - 5.6% peptide presenting high mass or isotopic deviation. Thu May 02 11:42:23 BST 2019 Parsing 131104_NB8_01.ms-amanda.csv. Thu May 02 11:42:23 BST 2019 Loading spectra for 131104_NB8_01.ms-amanda.csv. Thu May 02 11:42:23 BST 2019 Importing 131104_NB8_01.mgf Thu May 02 11:42:24 BST 2019 131104_NB8_01.mgf imported. Thu May 02 11:42:24 BST 2019 Collecting peptides to map. Thu May 02 11:42:24 BST 2019 Mapping peptides to proteins. Thu May 02 11:42:24 BST 2019 Importing PSMs from 131104_NB8_01.ms-amanda.csv Thu May 02 11:42:25 BST 2019 4 identified spectra (0.1%) did not present a valid peptide. Thu May 02 11:42:25 BST 2019 3118 of the best scoring peptides were excluded by the import filters: Thu May 02 11:42:25 BST 2019 - 99.6% peptide length less than 8 or greater than 30. Thu May 02 11:42:25 BST 2019 Parsing 131104_NB8_01.msgf.mzid. Thu May 02 11:42:26 BST 2019 Loading spectra for 131104_NB8_01.msgf.mzid. Thu May 02 11:42:26 BST 2019 Collecting peptides to map. Thu May 02 11:42:26 BST 2019 Mapping peptides to proteins. Thu May 02 11:42:26 BST 2019 Importing PSMs from 131104_NB8_01.msgf.mzid Thu May 02 11:42:27 BST 2019 Parsing 131104_NB9_01.ms-amanda.csv. Thu May 02 11:42:28 BST 2019 Loading spectra for 131104_NB9_01.ms-amanda.csv. Thu May 02 11:42:28 BST 2019 Importing 131104_NB9_01.mgf Thu May 02 11:42:28 BST 2019 131104_NB9_01.mgf imported. Thu May 02 11:42:28 BST 2019 Collecting peptides to map. Thu May 02 11:42:28 BST 2019 Mapping peptides to proteins. Thu May 02 11:42:28 BST 2019 Importing PSMs from 131104_NB9_01.ms-amanda.csv Thu May 02 11:42:29 BST 2019 1 identified spectra (0.0%) did not present a valid peptide. Thu May 02 11:42:29 BST 2019 3307 of the best scoring peptides were excluded by the import filters: Thu May 02 11:42:29 BST 2019 - 99.7% peptide length less than 8 or greater than 30. Thu May 02 11:42:29 BST 2019 Parsing 131104_NB9_01.msgf.mzid. Thu May 02 11:42:30 BST 2019 Loading spectra for 131104_NB9_01.msgf.mzid. Thu May 02 11:42:30 BST 2019 Collecting peptides to map. Thu May 02 11:42:30 BST 2019 Mapping peptides to proteins. Thu May 02 11:42:30 BST 2019 Importing PSMs from 131104_NB9_01.msgf.mzid Thu May 02 11:42:31 BST 2019 1 identified spectra (0.0%) did not present a valid peptide. Thu May 02 11:42:31 BST 2019 19 of the best scoring peptides were excluded by the import filters: Thu May 02 11:42:31 BST 2019 - 94.7% peptide mapping to both target and decoy. Thu May 02 11:42:31 BST 2019 - 5.3% peptide presenting high mass or isotopic deviation. Thu May 02 11:42:31 BST 2019 Parsing 140303_NB63_01.ms-amanda.csv. Thu May 02 11:42:32 BST 2019 Loading spectra for 140303_NB63_01.ms-amanda.csv. Thu May 02 11:42:32 BST 2019 Importing 140303_NB63_01.mgf Thu May 02 11:42:32 BST 2019 140303_NB63_01.mgf imported. Thu May 02 11:42:32 BST 2019 Collecting peptides to map. Thu May 02 11:42:32 BST 2019 Mapping peptides to proteins. Thu May 02 11:42:32 BST 2019 Importing PSMs from 140303_NB63_01.ms-amanda.csv Thu May 02 11:42:33 BST 2019 2 identified spectra (0.0%) did not present a valid peptide. Thu May 02 11:42:33 BST 2019 3096 of the best scoring peptides were excluded by the import filters: Thu May 02 11:42:33 BST 2019 - 99.4% peptide length less than 8 or greater than 30. Thu May 02 11:42:33 BST 2019 Parsing 140303_NB63_01.msgf.mzid. Thu May 02 11:42:34 BST 2019 Loading spectra for 140303_NB63_01.msgf.mzid. Thu May 02 11:42:34 BST 2019 Collecting peptides to map. Thu May 02 11:42:34 BST 2019 Mapping peptides to proteins. Thu May 02 11:42:34 BST 2019 Importing PSMs from 140303_NB63_01.msgf.mzid Thu May 02 11:42:35 BST 2019 Parsing 140303_NB64_01.ms-amanda.csv. Thu May 02 11:42:35 BST 2019 Loading spectra for 140303_NB64_01.ms-amanda.csv. Thu May 02 11:42:35 BST 2019 Importing 140303_NB64_01.mgf Thu May 02 11:42:35 BST 2019 140303_NB64_01.mgf imported. Thu May 02 11:42:35 BST 2019 Collecting peptides to map. Thu May 02 11:42:35 BST 2019 Mapping peptides to proteins. Thu May 02 11:42:35 BST 2019 Importing PSMs from 140303_NB64_01.ms-amanda.csv Thu May 02 11:42:36 BST 2019 1 identified spectra (0.0%) did not present a valid peptide. Thu May 02 11:42:36 BST 2019 2584 of the best scoring peptides were excluded by the import filters: Thu May 02 11:42:36 BST 2019 - 99.5% peptide length less than 8 or greater than 30. Thu May 02 11:42:36 BST 2019 Parsing 140303_NB64_01.msgf.mzid. Thu May 02 11:42:37 BST 2019 Loading spectra for 140303_NB64_01.msgf.mzid. Thu May 02 11:42:37 BST 2019 Collecting peptides to map. Thu May 02 11:42:37 BST 2019 Mapping peptides to proteins. Thu May 02 11:42:37 BST 2019 Importing PSMs from 140303_NB64_01.msgf.mzid Thu May 02 11:42:38 BST 2019 Parsing 140303_NB65_01.ms-amanda.csv. Thu May 02 11:42:38 BST 2019 Loading spectra for 140303_NB65_01.ms-amanda.csv. Thu May 02 11:42:38 BST 2019 Importing 140303_NB65_01.mgf Thu May 02 11:42:38 BST 2019 140303_NB65_01.mgf imported. Thu May 02 11:42:38 BST 2019 Collecting peptides to map. Thu May 02 11:42:39 BST 2019 Mapping peptides to proteins. Thu May 02 11:42:39 BST 2019 Importing PSMs from 140303_NB65_01.ms-amanda.csv Thu May 02 11:42:39 BST 2019 1 identified spectra (0.0%) did not present a valid peptide. Thu May 02 11:42:39 BST 2019 2235 of the best scoring peptides were excluded by the import filters: Thu May 02 11:42:39 BST 2019 - 99.5% peptide length less than 8 or greater than 30. Thu May 02 11:42:39 BST 2019 Parsing 140303_NB65_01.msgf.mzid. Thu May 02 11:42:41 BST 2019 Loading spectra for 140303_NB65_01.msgf.mzid. Thu May 02 11:42:41 BST 2019 Collecting peptides to map. Thu May 02 11:42:41 BST 2019 Mapping peptides to proteins. Thu May 02 11:42:44 BST 2019 Importing PSMs from 140303_NB65_01.msgf.mzid Thu May 02 11:42:45 BST 2019 Parsing 140303_NB66_01.ms-amanda.csv. Thu May 02 11:42:45 BST 2019 Loading spectra for 140303_NB66_01.ms-amanda.csv. Thu May 02 11:42:45 BST 2019 Importing 140303_NB66_01.mgf Thu May 02 11:42:45 BST 2019 140303_NB66_01.mgf imported. Thu May 02 11:42:45 BST 2019 Collecting peptides to map. Thu May 02 11:42:45 BST 2019 Mapping peptides to proteins. Thu May 02 11:42:45 BST 2019 Importing PSMs from 140303_NB66_01.ms-amanda.csv Thu May 02 11:42:46 BST 2019 1 identified spectra (0.0%) did not present a valid peptide. Thu May 02 11:42:46 BST 2019 2139 of the best scoring peptides were excluded by the import filters: Thu May 02 11:42:46 BST 2019 - 99.5% peptide length less than 8 or greater than 30. Thu May 02 11:42:46 BST 2019 Parsing 140303_NB66_01.msgf.mzid. Thu May 02 11:42:47 BST 2019 Loading spectra for 140303_NB66_01.msgf.mzid. Thu May 02 11:42:47 BST 2019 Collecting peptides to map. Thu May 02 11:42:47 BST 2019 Mapping peptides to proteins. Thu May 02 11:42:47 BST 2019 Importing PSMs from 140303_NB66_01.msgf.mzid Thu May 02 11:42:48 BST 2019 File import completed. 738483 first hits imported (5277204 secondary) from 374376 spectra. Thu May 02 11:42:48 BST 2019 [725396 first hits passed the initial filtering] Thu May 02 11:42:48 BST 2019 Computing assumptions probabilities. Thu May 02 11:42:49 BST 2019 Saving assumptions probabilities. Thu May 02 13:37:17 BST 2019 Selecting best peptide per spectrum. Thu May 02 14:49:45 BST 2019 Computing PSM probabilities. Thu May 02 14:49:45 BST 2019 Scoring PTMs in PSMs (D-score and PhosphoRS) Thu May 02 15:57:36 BST 2019 An error occurred: Java exception: 'GC overhead limit exceeded: java.lang.OutOfMemoryError'. Thu May 02 15:57:36 BST 2019 Please contact the developers (https://github.com/compomics/peptide-shaker/issues).
Thu May 02 15:57:36 BST 2019 Importing Data Canceled!"