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compomics / peptide-shaker

Interpretation of proteomics identification results
http://compomics.github.io/projects/peptide-shaker.html
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OX as part of taxonomy #444

Closed jcanderan closed 3 years ago

jcanderan commented 3 years ago

Is there any chance to include OX (from uniprot header) as part of the taxonomy or else as its own column in the output reports? For example: Bacteroides fragilis str. 3988T(B)14 (OX=1339315) or whatever would be most appropriate.

Thanks!

hbarsnes commented 3 years ago

Just released PeptideShaker v2.0.16 which includes the organism identifier, i.e. content of the OX tag in UniProt headers, as a separate columns in the protein exports. Please let me know if it does not work as wanted, and I'll reopen the issue.